View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_low_11 (Length: 201)
Name: NF8533_low_11
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30470325 - 30470446
Alignment:
| Q |
1 |
accttgtcttgtccaccacattacaatgaagaaaaagatggttatactaatatgtctcttcacccaaatcgcagaaaacacaattgaggacagagttctt |
100 |
Q |
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| T |
30470325 |
accttgtcttgtccaccacattacaatgaagaaaaagatggttata------tgtctcttcacccaaatcgcagaaaacacaattgaggacagagttctt |
30470418 |
T |
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| Q |
101 |
gtccaacacattgcgaatcacaaggttt |
128 |
Q |
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| T |
30470419 |
gtccaacacattacgaatcacaaggttt |
30470446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 30470551 - 30470594
Alignment:
| Q |
142 |
attcaaattaccctctaaaaccaacaacttttcaatcaccttat |
185 |
Q |
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| T |
30470551 |
attcaaattaccctctaaaaccaacaacttttcaatcaccttat |
30470594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 3085590 - 3085703
Alignment:
| Q |
8 |
cttgtccaccacattacaatgaagaaaaagatggttatactaatatgtctcttcacccaaatcgcagaaaacacaattgaggacagagttcttgtccaac |
107 |
Q |
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| T |
3085590 |
cttgtcaaccacattacaatgaagaaagatatcgttaga------tgtttcttcatccaaatcgcacaaaacacaattaaggttagagttccggtccaac |
3085683 |
T |
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| Q |
108 |
acattgcgaatcacaaggtt |
127 |
Q |
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| T |
3085684 |
acattacgaattacaaggtt |
3085703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 3085813 - 3085848
Alignment:
| Q |
146 |
aaattaccctctaaaaccaacaacttttcaatcacc |
181 |
Q |
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| T |
3085813 |
aaattaccctctaaaaccaacaacttttcaaccacc |
3085848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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