View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8533_low_6 (Length: 278)
Name: NF8533_low_6
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_low_6 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 38181997 - 38181725
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181997 |
gtttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
38181898 |
T |
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| Q |
106 |
gataaagagtcgaatacttgtgaaagagnnnnnnnttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38181897 |
gataaagagtcgaatacttgtgaaagagaaaaaatttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatactc |
38181798 |
T |
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| Q |
206 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaattaatg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38181797 |
aaaatcaaattcggaagccaatcatttaacagatgcatccagagaaatcaattcattgggctcctaattaatg |
38181725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 38189134 - 38189406
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189134 |
gtttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
38189233 |
T |
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| Q |
106 |
gataaagagtcgaatacttgtgaaagagnnnnnnnttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38189234 |
gataaagagtcgaatacttgtgaaagagaaaaaatttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatactc |
38189333 |
T |
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| Q |
206 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaattaatg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38189334 |
aaaatcaaattcggaagccaatcatttaacagatgcatccagagaaatcaattcattgggctcctaattaatg |
38189406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 38209223 - 38208951
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38209223 |
gtttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
38209124 |
T |
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| Q |
106 |
gataaagagtcgaatacttgtgaaagagnnnnnnnttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38209123 |
gataaagagtcgaatacttgtgaaagagaaaaaatttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatactc |
38209024 |
T |
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| Q |
206 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaattaatg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38209023 |
aaaatcaaattcggaagccaatcatttaacagatgcatccagagaaatcaattcattgggctcctaattaatg |
38208951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 38216359 - 38216631
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38216359 |
gtttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
38216458 |
T |
|
| Q |
106 |
gataaagagtcgaatacttgtgaaagagnnnnnnnttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38216459 |
gataaagagtcgaatacttgtgaaagagaaaaaatttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatactc |
38216558 |
T |
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| Q |
206 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaattaatg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38216559 |
aaaatcaaattcggaagccaatcatttaacagatgcatccagagaaatcaattcattgggctcctaattaatg |
38216631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 38171528 - 38171795
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| || |||| ||||||||| |
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| T |
38171528 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaacagtgggagcacaattgtaaatgtttagcggtttcactaaaagaaagacgaga |
38171627 |
T |
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| Q |
106 |
gataaagagtcgaatacttgtgaaagagnnnnnnnttcagagaccaagctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38171628 |
gataaagagtcgaatacttgtgaaagagaaaaaatttcagagaccaggctgattacatcatgtccattgagaactcatatgaacagctgctattatcctc |
38171727 |
T |
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| Q |
206 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38171728 |
aaaatcaaattcggaagccaatcatttaacagatgcatcgagagaaatcaattcattgggctcctaat |
38171795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 26032056 - 26032181
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaatgtttaacggttttgcttaaaggaagacgaga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||| |||||||||||||| |
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| T |
26032056 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtagtagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgaga |
26032155 |
T |
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| Q |
106 |
gataaagagtcgaatacttgtgaaag |
131 |
Q |
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|||||||||||||||| |||||||| |
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| T |
26032156 |
cataaagagtcgaatacgtgtgaaag |
26032181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 38446246 - 38446118
Alignment:
| Q |
6 |
gtttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcacaactgtaaat-gtttaacggttttgcttaaaggaagacgag |
104 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||| || |||| |||||||| |
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| T |
38446246 |
gtttggtggtatgtacgctcgacatttgagagttggtctgagaccaatagtgggagcacaaatgtaactattttaacggtttcgccaaaagtaagacgag |
38446147 |
T |
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| Q |
105 |
agataaagagtcgaatacttgtgaaagag |
133 |
Q |
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|||||| |||||| |||| |||||||||| |
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| T |
38446146 |
agataaggagtcggatacgtgtgaaagag |
38446118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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