View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8533_low_8 (Length: 235)
Name: NF8533_low_8
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8533_low_8 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 5828917 - 5828699
Alignment:
| Q |
17 |
aagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5828917 |
aagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaa |
5828818 |
T |
|
| Q |
117 |
cagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5828817 |
cagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactc |
5828718 |
T |
|
| Q |
217 |
ggtttcaccattgatattc |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5828717 |
ggtttcaccattgatattc |
5828699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 5822960 - 5823178
Alignment:
| Q |
17 |
aagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822960 |
aagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaa |
5823059 |
T |
|
| Q |
117 |
cagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5823060 |
cagaacttctatcaacaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactc |
5823159 |
T |
|
| Q |
217 |
ggtttcaccattgatattc |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5823160 |
ggtttcaccattgatattc |
5823178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 5832838 - 5833051
Alignment:
| Q |
17 |
aagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaa |
116 |
Q |
| |
|
||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
5832838 |
aagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaaagaaagcatcagatgaaataccaa |
5832937 |
T |
|
| Q |
117 |
cagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
5832938 |
cagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactc |
5833037 |
T |
|
| Q |
217 |
ggtttcaccattga |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5833038 |
aatttcaccattga |
5833051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 24038462 - 24038658
Alignment:
| Q |
21 |
aaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacaga |
120 |
Q |
| |
|
||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| || ||||| || ||||| || ||| | |
|
|
| T |
24038462 |
aaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaa |
24038561 |
T |
|
| Q |
121 |
acttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcg |
217 |
Q |
| |
|
| | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || ||||| ||||| | ||||||||||||| |
|
|
| T |
24038562 |
attcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactacttctgatgtcctacattgatactcg |
24038658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University