View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8533_low_9 (Length: 229)

Name: NF8533_low_9
Description: NF8533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8533_low_9
NF8533_low_9
[»] chr2 (20 HSPs)
chr2 (1-223)||(9329250-9329472)
chr2 (1-223)||(9283450-9283669)
chr2 (1-223)||(9275172-9275396)
chr2 (1-222)||(9316680-9316898)
chr2 (1-158)||(12018190-12018344)
chr2 (1-67)||(9060374-9060440)
chr2 (1-55)||(8572777-8572831)
chr2 (1-168)||(10348509-10348676)
chr2 (1-66)||(9357924-9357989)
chr2 (1-55)||(9292747-9292801)
chr2 (1-54)||(12011869-12011922)
chr2 (5-54)||(7612716-7612765)
chr2 (1-128)||(10336560-10336684)
chr2 (134-223)||(9321627-9321722)
chr2 (1-81)||(7114921-7114998)
chr2 (1-55)||(9321810-9321864)
chr2 (5-55)||(12005445-12005495)
chr2 (1-54)||(9365415-9365468)
chr2 (5-50)||(11986805-11986850)
chr2 (1-53)||(14551140-14551192)
[»] chr4 (1 HSPs)
chr4 (5-81)||(561966-562039)
[»] chr5 (1 HSPs)
chr5 (1-128)||(36225494-36225623)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-55)||(5278-5332)
[»] chr3 (2 HSPs)
chr3 (181-223)||(37463149-37463191)
chr3 (1-55)||(37463341-37463395)
[»] chr8 (1 HSPs)
chr8 (1-50)||(41965998-41966047)
[»] chr1 (1 HSPs)
chr1 (1-49)||(29467101-29467149)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9329472 - 9329250
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329472 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 9329373  T
Q  101 taccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9329372 taccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatgggtc 9329273  T
Q  201 ttatcggttcatgcaacggcctc 223  Q
    |||||||||||||||||||||||    
T  9329272 ttatcggttcatgcaacggcctc 9329250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9283450 - 9283669
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 100  Q
    |||||||  |||| |||| ||||| ||||| ||||  |||||||||||||||| |   |||||||| ||||| |||||||| |  | ||| ||| |||||    
T  9283450 atcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagt---tccctcaacttcaaactcatcctccgtcacaagaccaatctc 9283546  T
Q  101 taccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctc 200  Q
    |||||||||||| | ||||| |||||||||||||| || || |||||||||||||||| ||||||||| | |||| |||||| |||||||| || |||||    
T  9283547 taccaactcgatttccctaacctaaccaaatccataataccgctcaaccatcctttcaccaccaacatcgatcctttcacgcttaacagcatcaaggctc 9283646  T
Q  201 ttatcggttcatgcaacggcctc 223  Q
    |||| |||||||| |||||||||    
T  9283647 ttattggttcatgtaacggcctc 9283669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9275396 - 9275172
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaata-ccgatct 99  Q
    ||||||||||||  | || ||||||||||||||||  |||||||| ||||||   ||||||||||||||||||||||| ||||| | ||| | || | ||    
T  9275396 atcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaa---aattccctcaatttcaacctcattcttcaacacaacacccaaact 9275300  T
Q  100 ctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcag----caccaacattgctcctgtcacgcgtaacagcaacat 195  Q
    |||| ||||| || | ||||| |||||||||| ||| || | ||||||||||||||||||     | ||||| || | || ||||||||||||||| |||    
T  9275299 ctacgaactcaatttccctaacctaaccaaattcataatacaactcaaccatcctttcagtagcaagcaacaatgattctttcacgcgtaacagcaccat 9275200  T
Q  196 ggctcttatcggttcatgcaacggcctc 223  Q
    ||||||||| |||||||| |||||||||    
T  9275199 ggctcttataggttcatgtaacggcctc 9275172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9316898 - 9316680
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 100  Q
    ||||||||||||  |||| ||||| ||||||||||  ||||||||||||||||||||||||||||||     | | ||||||||   |||  |||| |||    
T  9316898 atcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaactc 9316799  T
Q  101 taccaactc---gatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatgg 197  Q
    |||||| ||   ||| | ||| | ||||| |||||||||||||||||||||||||||||      |||||  ||||||||||||  ||||||||  ||||    
T  9316798 taccaaatcgatgatttccctgacctaacgaaatccatgattccactcaaccatccttt------caacacagctcctgtcacgtataacagcataatgg 9316705  T
Q  198 ctcttatcggttcatgcaacggcct 222  Q
    ||||| |||||||||| ||||||||    
T  9316704 ctcttctcggttcatgtaacggcct 9316680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12018190 - 12018344
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 100  Q
    |||||||||||||||||||||||| ||||||||||| || ||||| ||||||||    ||||||||||||||||||||||| |  | | | ||| |||||    
T  12018190 atcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacgacacccatctc 12018289  T
Q  101 taccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttca 158  Q
    ||||||||| || | ||||  |||||||   || | || |||||||||||||||||||    
T  12018290 taccaactccatttccctaccctaacca---ccgtcatcccactcaaccatcctttca 12018344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9060374 - 9060440
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaat 67  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||||    
T  9060374 atcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaat 9060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8572777 - 8572831
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8572777 atcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaat 8572831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10348676 - 10348509
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct---tcagctcaataccgat 97  Q
    ||||||||||||| |||||||||||| ||| ||||  |||||||||||   ||| ||||| || |||||||||||||||||   |||   ||  ||||||    
T  10348676 atcacttaaatccttaatcgattccctcaaattcatcaaccttcacct---aaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgat 10348580  T
Q  98 ctctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacat 168  Q
     ||||||||||| || | ||||| ||||||||||| || |||||||||||| |||| ||||  ||||||||    
T  10348579 ttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacat 10348509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9357989 - 9357924
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaa 66  Q
    ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||| ||||    
T  9357989 atcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaataattccatcaa 9357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9292801 - 9292747
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  9292801 atcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaat 9292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12011869 - 12011922
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 54  Q
    |||||||||||||||||||||||| ||||||||||| || ||||||||||||||    
T  12011869 atcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 7612765 - 7612716
Alignment:
Q  5 cttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 54  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  7612765 cttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10336684 - 10336560
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctc 100  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||||||  ||   |||||||||||||| ||||||||||| |  | ||| ||||| |||    
T  10336684 atcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaa---aattccctcaattttaacctcatcctccgtcgcaaaaccgacctc 10336588  T
Q  101 taccaactcgatcttcctaatctaacca 128  Q
    ||||| ||| || | ||||| |||||||    
T  10336587 taccacctccatttccctaacctaacca 10336560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 9321722 - 9321627
Alignment:
Q  134 atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatggctcttatcggttcatgcaacggcctc 223  Q
    ||||||||||||||||||||||||| |||||| ||  |||||||||| |||||      ||| | |||||||||||||||||| || |||||||||    
T  9321722 atgattccactcaaccatcctttcaccaccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctc 9321627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7114921 - 7114998
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct 81  Q
    ||||||||||||| |||||||||||||||| ||||  |||||||| || |||   |||||| ||||||||||| |||||||    
T  7114921 atcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaa---aattccttcaatttcaacttcatcct 7114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9321864 - 9321810
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    |||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9321864 atcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaat 9321810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 12005445 - 12005495
Alignment:
Q  5 cttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    |||||||||||||||||||| ||||||||||| |||||||| || ||||||    
T  12005445 cttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaat 12005495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9365468 - 9365415
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 54  Q
    |||||||||||||||||||||||| |||| |||||| ||||| || ||||||||    
T  9365468 atcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 11986805 - 11986850
Alignment:
Q  5 cttaaatccataatcgattcccacaacttcactaaccttcacctca 50  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||    
T  11986805 cttaaatccataattgattctcacaacttcaccaatcttcacctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14551192 - 14551140
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaa 53  Q
    ||||||| ||||| |||||||||||||||||||||  || |||||||| ||||    
T  14551192 atcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 562039 - 561966
Alignment:
Q  5 cttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||| |||||||||||    
T  562039 cttaaatccataatcgattcccacaacttcactaaccttcacctcaaa---aactccctcaattttaacctcatcct 561966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 36225623 - 36225494
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaa--ataattccctcaatttcaacctcatccttcagctcaataccgatc 98  Q
    ||||||||||||  |||||||||| |||||||||||||| |||||||||||||  | || ||| |||| ||||||||||||||||  |  || ||| | |    
T  36225623 atcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaattaaaactccttcaacttcaacctcatccttcgccagaaaaccaaac 36225524  T
Q  99 tctaccaactcgatcttcctaatctaacca 128  Q
    |||||||||| ||| | ||||| |||||||    
T  36225523 tctaccaacttgatttccctaacctaacca 36225494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5332 - 5278
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||| |||||||    
T  5332 atcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaat 5278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37463191 - 37463149
Alignment:
Q  181 gcgtaacagcaacatggctcttatcggttcatgcaacggcctc 223  Q
    |||| |||||| ||||||||||||||||||||| |||||||||    
T  37463191 gcgtgacagcaccatggctcttatcggttcatgtaacggcctc 37463149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37463395 - 37463341
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 55  Q
    ||||||||||||  |||||||||| ||||||||||  |||||||| |||||||||    
T  37463395 atcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaat 37463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41965998 - 41966047
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctca 50  Q
    |||||||  |||| |||||||||||||||||||||  |||||||||||||    
T  41965998 atcacttcgatccttaatcgattcccacaacttcatcaaccttcacctca 41966047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29467101 - 29467149
Alignment:
Q  1 atcacttaaatccataatcgattcccacaacttcactaaccttcacctc 49  Q
    ||||||| ||||| |||||||||||||||||||||  || |||||||||    
T  29467101 atcacttcaatccctaatcgattcccacaacttcatcaaacttcacctc 29467149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University