View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8534_high_1 (Length: 399)
Name: NF8534_high_1
Description: NF8534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8534_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 18012561 - 18012926
Alignment:
| Q |
15 |
atgaagtgataattgatttgaattaaccaaacatgcttgcttacctgcatcataactacaatgcctcctatgagtaatccttctcttgacatgacgccaa |
114 |
Q |
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| T |
18012561 |
atgaagtgataattgatttgaattaaccaaacatgct----tacctgcatcataactacaatgcctcctatgagtaatccttctcttgacatgacgccaa |
18012656 |
T |
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| Q |
115 |
tgatgatactttattacatgaagaattccccacactcttcctggatgagtatgatggctattaattccactagacattccaacctctttattctgaattc |
214 |
Q |
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| T |
18012657 |
tgatgatactttattacatgaagaattccccacactcttcctggatgagtatgatggctattaattccactagacattccaacctctttattctgaattc |
18012756 |
T |
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| Q |
215 |
gttttcccatggctagttaaacctaatatgaacctgtcacaaaacaaatattaagaatcacatcaacaagtaattatagttactagaggttaagcaccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18012757 |
gttttcccatggctagttaaacctaatatgaacctgtcacaaaacaaatattaagaatcacatcaacaagtaattatagttactagaggttaagcaccat |
18012856 |
T |
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| Q |
315 |
ttcatacaagttatcttgagaatttttgttgctaaaaatttagataaggtgacacatacacccttgcaag |
384 |
Q |
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||||||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
18012857 |
ttcatacaagttatcttaagaatttttggtactaaaaatttagataaggggacacatacacccttgcaag |
18012926 |
T |
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