View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8534_high_2 (Length: 365)
Name: NF8534_high_2
Description: NF8534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8534_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 34341826 - 34342160
Alignment:
| Q |
18 |
ctgagcaagaagaattttccagtgggcaagtggtgtggtggaagcaacacaaggatggtagcaagagaagcagcttgatcagcagtgtgagtgccctcac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34341826 |
ctgagcaagaagaattttccagtgggcaagtggtgtggtggaagcaacacaaggatggtagcaagagaagcagcttgatcagcagtgtgagtgcccttac |
34341925 |
T |
|
| Q |
118 |
cttttgtcattgaggtttgagtgaagccagggcaataacagttcacactcatcaactttgttgtattaatattatatctcttagccaacacttttgagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34341926 |
cttttgtcattgaggtttgagtgaagccagggcaaaaacagttcacactcatcaacttcgttgtattaatattatatctcttagccaacacttttgagta |
34342025 |
T |
|
| Q |
218 |
tgcatttagagccaattttgatactgcatagtctgtccaatatgatggccacccttgactcttccatgttccatttctcacatctcttagaaattttttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34342026 |
tgcatttagagccaattttgatactgcatagtctgtccaatatgatggccacccttgactcttccatgttccatttctcacatctcttagaaattttttc |
34342125 |
T |
|
| Q |
318 |
accatttcgttgatttcatcttccttcaattcatc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34342126 |
accatttcgttgatttcatcttccttcaattcatc |
34342160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University