View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8534_low_2 (Length: 399)
Name: NF8534_low_2
Description: NF8534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8534_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 33050358 - 33049981
Alignment:
| Q |
16 |
catcaagaggacttcatctgaatcataaccttcattatgagcaacctgtgattcatcgccnnnnnnn-ccttggaactttcttggacttgcattcagata |
114 |
Q |
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| T |
33050358 |
catcaagaggacttcatctgaatcataaccctcattatgagcaacctgtgattcatcgccttttttttccttggaactttcttggacttgaattcagata |
33050259 |
T |
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| Q |
115 |
cataatgcccccattttttaagattatatcattgaatctcattctttctcgaagctttctttatttttacttgaaccttcatcattcttggaagcattat |
214 |
Q |
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| T |
33050258 |
cataatgcccccattttttaagattatatcattgaatctccttctttctcgaagctttctttattt-------aaccttaatcattcttggaagctttat |
33050166 |
T |
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| Q |
215 |
cattccaataattctttcctttcttgtatttccttttatttgtatattgagcttgcaaagcttgatctaatgcaaaacctttggatttttctttgttcct |
314 |
Q |
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| T |
33050165 |
cattccaataattctttcctttcttgcatttccttttatttgtatattgagcttgcaaagcttgatctaatgcagaacctttggatttttctttgttcct |
33050066 |
T |
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| Q |
315 |
atc----------------agtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaag |
383 |
Q |
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| T |
33050065 |
atcggttaacctcaattcatgtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaag |
33049981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 28452125 - 28452187
Alignment:
| Q |
321 |
gcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaag |
383 |
Q |
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| T |
28452125 |
gcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaag |
28452187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 28451893 - 28451933
Alignment:
| Q |
85 |
ttggaactttcttggacttgcattcagatacataatgcccc |
125 |
Q |
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| T |
28451893 |
ttggaactttcttagacttgcattcagatgcataatgcccc |
28451933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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