View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8534_low_4 (Length: 375)
Name: NF8534_low_4
Description: NF8534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8534_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 18639214 - 18639563
Alignment:
| Q |
19 |
agtaccgaactttataattgactcagtcgacgaaatgtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18639214 |
agtaccgaactttataattgactcagccgacgaaatatcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
18639313 |
T |
|
| Q |
119 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattgaaaatacctctgacaacaactg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18639314 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattgaaaatacctctgacaacaactg |
18639413 |
T |
|
| Q |
219 |
ctctgatcttcccactgcatcaatccataacaggaatcttaggtaagaattctagcaagtagcaacacattttttcaaatagtcttttgaacacactcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18639414 |
ctctgatcttcccactgcatcaatccataacaggaatcttaggtaagaatactagcaagtagcaacacattttttcaaatagtcttttggacacactcta |
18639513 |
T |
|
| Q |
319 |
ttattgaataaatcccactaaataacctagaccacgcaatgaaacaccaa |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18639514 |
ttattgaataaatcccactaaataacctagaccacacaatgaaacaccaa |
18639563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 18632862 - 18632500
Alignment:
| Q |
19 |
agtaccgaactttataattgactcagtcgacgaaatgtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
118 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||| |
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|
| T |
18632862 |
agtactgaactttataattgactccaccgacaaaaggtcagtctgaaaagctttgaggtgaacatcttcattccaacctttaatctttgttatggcctat |
18632763 |
T |
|
| Q |
119 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aaatacctctgacaacaact |
217 |
Q |
| |
|
| |||||| |||||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| || |
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|
| T |
18632762 |
cgaacaacttgaagaacacgattacgagatttacaatgcaaggaatcaccattaccatgatgctaataattaatatagacaaatacctctgacaacagct |
18632663 |
T |
|
| Q |
218 |
gctctgatcttcccactgcatcaatccataacaggaatcttaggta----------ag---------aattctagcaagtagcaacacattttttcaaat |
298 |
Q |
| |
|
||||||||||||||| || |||||| || ||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
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| T |
18632662 |
gctctgatcttcccattgaatcaattcacaacaggaatcttaggtatacattgctcagactagaagaaatgctagcaagtagcaacacattttttcaaat |
18632563 |
T |
|
| Q |
299 |
agtcttttgaacacactctattattgaataaatcccactaaataacctagaccacgcaatgaa |
361 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
18632562 |
agtcttttggacacactctattattggataaatcccactaaataacctagcccactcaatgaa |
18632500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 1838186 - 1837844
Alignment:
| Q |
19 |
agtaccgaactttataattgactcagtcgacgaaatgtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
118 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
1838186 |
agtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatctttgttatggcctat |
1838087 |
T |
|
| Q |
119 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattgaaaatacctctgacaacaactg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1838086 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattgaaaatacctctgacaacaactg |
1837987 |
T |
|
| Q |
219 |
ctctgatcttcccactgcatcaatccataacaggaatcttaggtaagaattctagcaagtagcaacacattttttcaaatagtcttttgaacacactcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1837986 |
ctctgatcttcccactgcatcaatccataacaggaatcttaggtaagaatgctagcaagtagcaacacattttttcaaatagtcttttggacacactcta |
1837887 |
T |
|
| Q |
319 |
ttattgaataaatcccactaaataacctagaccacgcaatgaa |
361 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1837886 |
ttattggataaatcccactaaataacctagaccacacaatgaa |
1837844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 1845047 - 1845236
Alignment:
| Q |
19 |
agtaccgaactttataattgactcagtcgacgaaatgtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
118 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
1845047 |
agtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaacctttaatctttgttatggtctat |
1845146 |
T |
|
| Q |
119 |
caaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aaatacctct |
207 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
1845147 |
caaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct |
1845236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 41383823 - 41383948
Alignment:
| Q |
139 |
attaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattgaaaa-tacctctgacaacaactgctctgatcttcccactgca |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41383823 |
attaagatattcacaatgcatggaatcatcattaccatgatgcttataactaatatagaaaaatacctctgacaacaactgctctgatcttcccactgca |
41383922 |
T |
|
| Q |
238 |
tcaatccataacaggaatcttaggta |
263 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
41383923 |
tcaatccacaacaggaatcttaggta |
41383948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 41382338 - 41382462
Alignment:
| Q |
19 |
agtaccgaactttataattgactcagtcgacgaaatgtcagcctgaaaagctttgaggtgggcatcctcattccaacctttaatcttttttatggtctat |
118 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41382338 |
agtactgaactttataattgactcaaccgacgaaaggtcagcctaaaaagctttgaggtgggcatcctcattccaacctttaatctttgttatggtctat |
41382437 |
T |
|
| Q |
119 |
caaacaacgggaagaacacgattaa |
143 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
41382438 |
caaacaacgggaagaacacaattaa |
41382462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 41383972 - 41384019
Alignment:
| Q |
266 |
aattctagcaagtagcaacacattttttcaaatagtcttttgaacaca |
313 |
Q |
| |
|
||| |||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41383972 |
aatgctagcaggtagcaaaacattttttcaaatagtcttttgaacaca |
41384019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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