View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_high_1 (Length: 572)
Name: NF8535_high_1
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 541
Target Start/End: Complemental strand, 6587192 - 6586670
Alignment:
| Q |
19 |
acagaattctaacatgaattcattaagaaccggtgcatgtgggtgaaactctaaccagatccctattaaattagagtacagcaaggcctaacaccagcaa |
118 |
Q |
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| T |
6587192 |
acagaattctaacaagaattcattaagaaccggtgcatgtgggtgaaactctaaccagatccctattaaattagagtacagcaaggcctaacaccagcaa |
6587093 |
T |
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| Q |
119 |
aagttccctagggatgatttaaaattaaaccggttaatgttgatatctgttattgttagtgaaaactatgaacttaagatcctttttatttgatggttct |
218 |
Q |
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| T |
6587092 |
aagttccctagggatgatttaaaattaaaccgtttaatgttgatatctgttattgttagtgaaaactatgaacttaacatcctttttatttgatggttct |
6586993 |
T |
|
| Q |
219 |
atnnnnnnngtttaaagaaaaatggcagaatannnnnnnnactattatgataatccaatagatatatgatgccaattaatagtttggattgtacatttcc |
318 |
Q |
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| T |
6586992 |
ataaaaaaagtttaaagaaaaatggcagaattttttttttactattatgataatccaatagatatatgatgccaattaatagtttggattgtacatttcc |
6586893 |
T |
|
| Q |
319 |
caatcctataattggaaaataatagtaggtctgtggtcaaatttaacacaaatctataaaactctaagcataacatcctcaaaaacaatccctttacttt |
418 |
Q |
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| T |
6586892 |
gaatcctataattggaaaataatagtaggtctgtgctcaaatttaacacaaatctataaaactctaagcataacatcctcaaaaacaacccctttacttt |
6586793 |
T |
|
| Q |
419 |
tcaaaatatatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatcatcat |
518 |
Q |
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| T |
6586792 |
tcaaaatctatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatcatcat |
6586693 |
T |
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| Q |
519 |
tgtttcacatttatttgaattga |
541 |
Q |
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| T |
6586692 |
tgtttcacatttatttgaattga |
6586670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 6436578 - 6436659
Alignment:
| Q |
105 |
cctaacaccagcaaaagttccctagggatgatttaa-aattaaaccggttaatgttgatatctgttattgttagtgaaaact |
185 |
Q |
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| T |
6436578 |
cctaacacaagaaaaagttccctagcgataatttaataattaaacaggtaagtgttgatatcttttattatttgtgaaaact |
6436659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 514
Target Start/End: Complemental strand, 29659823 - 29659728
Alignment:
| Q |
419 |
tcaaaatatatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatca |
514 |
Q |
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| T |
29659823 |
tcaaaatttatattgccataattaaaagtgaaggcagtgcaactgcggaatcttagttctaattaacctatataataatttatgaatctcgtatca |
29659728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 514
Target Start/End: Complemental strand, 29719807 - 29719708
Alignment:
| Q |
419 |
tcaaaatatatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagcca----atataataattaatgaacctcatatca |
514 |
Q |
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||||||| ||||||| |||||| |||||||||||||| || ||| ||||| |||||||||||| || |||||||||||||||||||| |||||| |
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| T |
29719807 |
tcaaaatctatattgccaaaattaaaagtgaaggcagtccaactgtggaatcttagttctaattaaacaatatatataataattaatgaaccttatatca |
29719708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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