View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_high_2 (Length: 436)
Name: NF8535_high_2
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 43390080 - 43390505
Alignment:
| Q |
17 |
attttgtagcagatataaccttttcaaattctagggcggattctcatttgtatatcggttttgagaccattttttgtcgctgtcaaggaaaacagggtca |
116 |
Q |
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| T |
43390080 |
attttgtagcagatataaccttttcaaattctagggcggattctcatttgtatatcggttttgagaccattttttgtcgctgtcaaggaaaacagggtca |
43390179 |
T |
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| Q |
117 |
cattgacacttctacttttgtacacc---------tcgaaatttaattatgtctaactaatagccattctaatgtgagaagtaatgtaattgcatggcac |
207 |
Q |
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| T |
43390180 |
cattgacacttctactgttgtacaccaatatgtattcgaaatttaattatgtctgactaatagccattctaatgtgagaagtaatgtaattgcatgacac |
43390279 |
T |
|
| Q |
208 |
taaatttacttatatgctgttctctttcccaccaaagtatgctttttactggtttccaccattgaaaggttttaattgagtttgctattaaagttgattt |
307 |
Q |
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| T |
43390280 |
taaatttacttatatgctgttctctttcccaccaaagtatgctttttactggtttccaccattgaaaggttttaattgagtttgctattaaagttgattt |
43390379 |
T |
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| Q |
308 |
acaaagttttaatttagagccgtccaatattttgatccaatgactc-tgagttgttgatggaatctgagccgccgtaaatgtgtggaatcttttcataat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43390380 |
acaaagttttaatttagagccgtccaatattttgatccaatgactcttgagttgttgatggaatctgagccgccgtaaatgtgtggaatcttttcataat |
43390479 |
T |
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| Q |
407 |
gctagaagtctgaattcttctcactc |
432 |
Q |
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| T |
43390480 |
gctaaaagtctgaattcttcacactc |
43390505 |
T |
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