View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_high_3 (Length: 410)
Name: NF8535_high_3
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 25112207 - 25111831
Alignment:
| Q |
18 |
tttttgaacttcaaataagcatcttcgacctctacgtggccatgtggcagaaagcaaatatgtaagcatctccaacgaggttttatatggtatgtttcat |
117 |
Q |
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| T |
25112207 |
tttttgaacttcaaataagcatcttcgacctctacgtggccatgtggcagaaagcaaatatgtaagcatctccaacgaggttttatatggtatgtttcat |
25112108 |
T |
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| Q |
118 |
agtcttacggaatgcttctttagctcttattattcaatgaagcaatctccttggcaagttggttctataaattattttgtagatatctcttatatagtat |
217 |
Q |
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| T |
25112107 |
agtcttacggaatgcttctttagctctttttattcaatgaagcaatctccttggcaagttggttctataaattattttgtagatatctcttatatagtat |
25112008 |
T |
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| Q |
218 |
tagtatattgtgtcatacacaaaaaattaacttcttgtagtatattaggacctatttgattgggacttgatgaagggatttccttaagccttttagaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25112007 |
tagtatattgtgtcatacacaaaaaattaacttcttgtagtatattaggacctatttgattgtgacttgatgaagggatttccttaagccttttagaaag |
25111908 |
T |
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| Q |
318 |
aaaaataaaattgagttagcttaagatattaaccgactccatttagtgagataagatttagttcttgttatttgttg |
394 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||| |
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| T |
25111907 |
aaaaataaaattgagttagcttaagatattagccgacatcatttagtgagataagatttagatcttgttgtttgttg |
25111831 |
T |
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