View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8535_high_5 (Length: 356)

Name: NF8535_high_5
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8535_high_5
NF8535_high_5
[»] chr2 (1 HSPs)
chr2 (11-123)||(10376900-10377011)
[»] chr8 (1 HSPs)
chr8 (35-123)||(24801227-24801315)
[»] chr1 (4 HSPs)
chr1 (18-127)||(16803117-16803225)
chr1 (11-123)||(46887321-46887438)
chr1 (30-126)||(20061493-20061590)
chr1 (18-92)||(26051299-26051372)
[»] chr4 (1 HSPs)
chr4 (35-123)||(24778324-24778412)
[»] chr3 (1 HSPs)
chr3 (29-92)||(1255666-1255730)
[»] chr5 (1 HSPs)
chr5 (18-84)||(1494267-1494332)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 10377011 - 10376900
Alignment:
Q  11 tttggtgttaacagagaccccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacattgtatggtct 110  Q
    ||||||||| |||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| |||    
T  10377011 tttggtgttcacagaggccctcc-aaaatgttgtttctcgaaagacatgagaggaataacattttaaaacataataccaaaaatgaatattgtatgatct 10376913  T
Q  111 tcttcgaccactt 123  Q
    |||||||||||||    
T  10376912 tcttcgaccactt 10376900  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 24801315 - 24801227
Alignment:
Q  35 aaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacattgtatggtcttcttcgaccactt 123  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||| |||||||||||||||||||    
T  24801315 aaaatgttgtttctcgaaagacatgagaggaataacattttaaaacataataccaaaaataaaaattgtctggtcttcttcgaccactt 24801227  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 16803117 - 16803225
Alignment:
Q  18 ttaacagagaccccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacattgtatggtcttcttcga 117  Q
    ||||||||||||| || ||||||||||||||| ||||| ||| | ||||||| |||||||||||||||| |||||  | |||| ||||||||||||||||    
T  16803117 ttaacagagaccctcc-aaaatattgtttctcaaaagaaatgtgtggaataatattttaaaacataataccaaaacagtacatcgtatggtcttcttcga 16803215  T
Q  118 ccacttaatc 127  Q
    || |||||||    
T  16803216 ccgcttaatc 16803225  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 46887321 - 46887438
Alignment:
Q  11 tttggtgttaacagagaccccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacat------tgta 104  Q
    |||||||||||||||| || ||| | ||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||  |||      ||||    
T  46887321 tttggtgttaacagaggcctccc-agaatgttgtttctcgaaagacatgagaggaataacattctgaaacataataccaaaaatgagcattgtaggtgta 46887419  T
Q  105 tggtcttcttcgaccactt 123  Q
    |||||||||||||||||||    
T  46887420 tggtcttcttcgaccactt 46887438  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 20061493 - 20061590
Alignment:
Q  30 ccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacattgta-tggtcttcttcgaccacttaat 126  Q
    |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||||||| ||||||  ||||||| | ||||||||||| ||||||||||    
T  20061493 cccccaaaatgttgttcctcaaaagaaatgagaggaataacattttgaaacataataccaaaaacagacattgcactggtcttcttcaaccacttaat 20061590  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 26051372 - 26051299
Alignment:
Q  18 ttaacagagaccccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaa 92  Q
    ||||||||| || ||| ||||||||||||||||||| | ||||||| ||||||||||| |||||||||| |||||    
T  26051372 ttaacagaggccaccc-aaaatattgtttctcgaaaaaaatgagagaaataacattttgaaacataataccaaaa 26051299  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 24778324 - 24778412
Alignment:
Q  35 aaaatattgtttctcgaaagacatgagaggaataacattttaaaacataatatcaaaaatggacattgtatggtcttcttcgaccactt 123  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||  |||| ||| |||||||||||| |||||    
T  24778324 aaaatgttgtttctcaaaagacatgagaggaataacattttgaaacataataccaaaaataaacatagtacggtcttcttcgatcactt 24778412  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 1255730 - 1255666
Alignment:
Q  29 cccccgaaaatattgtttctcgaaagacatgagaggaataaca-ttttaaaacataatatcaaaa 92  Q
    ||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  1255730 cccccaaaaatgttgtttctcgaaagaaatgtgaggaataacatttttaaaacataataccaaaa 1255666  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 1494332 - 1494267
Alignment:
Q  18 ttaacagagaccccccgaaaatattgtttctcgaaagacatgagaggaataacattttaaaacataa 84  Q
    ||||||||| || ||| ||||| |||||| |||||||| | ||||||||||||||||||||||||||    
T  1494332 ttaacagaggccaccc-aaaatgttgtttttcgaaagaaaggagaggaataacattttaaaacataa 1494267  T

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