View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_high_9 (Length: 239)
Name: NF8535_high_9
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28913808 - 28913585
Alignment:
| Q |
1 |
ttggagtataaaagaacctctgatctatcatattttgttgctgatatttgtctctcttctgcgttatatggcagtggatctcaagggagatagaattgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28913808 |
ttggagtataaaagaacctctgatctatcatattttgttactgatatttgtctcttttctgcgttatatggcagtggatctcaagggagatagaattgtt |
28913709 |
T |
|
| Q |
101 |
acgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttattaatgtcacctcctattaaaagctaaatggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28913708 |
acgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttattaatgtcacctcctattaaaagctaaatggaa |
28913609 |
T |
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| Q |
201 |
aaatgttgtgaattggtaatttgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
28913608 |
aaatgttgtgaattggtaatttgt |
28913585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 28889495 - 28889274
Alignment:
| Q |
4 |
gagtataaaagaacctctgatctatcatattttgttgctgatatttgtctctcttctgcgttatatggcagtggatctcaagggagatagaattgttacg |
103 |
Q |
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|||||||||||||| | |||||||||||||||||| || ||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||| |
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| T |
28889495 |
gagtataaaagaacatatgatctatcatattttgtaactaatatttgtctctcttctactttacatggcagtggatctcaagggagagagaattgttacg |
28889396 |
T |
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| Q |
104 |
aaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttatt-aatgtcacctcctattaaaagctaaatggaaaa |
202 |
Q |
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| T |
28889395 |
aaatcgtattgatcgggctaatgaaaagggatggaggagagaatatccttttgcgatgtttttattaaatgatacctcatattaaaagctaaagggaaaa |
28889296 |
T |
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| Q |
203 |
atgttgtgaattggtaatttgt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
28889295 |
atgttgtgaattggtaatttgt |
28889274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 28923227 - 28923015
Alignment:
| Q |
1 |
ttggagtataaaagaacctctgatctatcatattttgttgctgatatttgtctctcttctgcgttatatggcagtggatctcaagggagatagaattgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28923227 |
ttggagtataaaagaacctctgatctatcatattttgttactgatatttgtctct--tctgctttatatggcagtggatctcaagggagatagaattgtt |
28923130 |
T |
|
| Q |
101 |
acgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttattaatgtcacctcctattaaaagctaaatggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| | | ||||| |||||||||| | |
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| T |
28923129 |
acgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatcctttcatgatatatttagtaatgttatgacatattagaagctaaatgcca |
28923030 |
T |
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| Q |
201 |
aaatgttgtgaattg |
215 |
Q |
| |
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||||||||||||||| |
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| T |
28923029 |
aaatgttgtgaattg |
28923015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 28932115 - 28931945
Alignment:
| Q |
6 |
gtataaaagaacctctgatctatcatattttgttgctgatatttgtct--ctcttctgcgttatatggcagtggatctcaagggagatagaattgttacg |
103 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||| | |||||| | |
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| T |
28932115 |
gtataaaagaacctctgatctatcatattttgttactgatattggtctttctcttctgctttatatggcagtggatctcaagggagattgcgttgttaag |
28932016 |
T |
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| Q |
104 |
aaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttattaatgt |
174 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
28932015 |
aaatcgtattgatctggccaatgaaaagggatggaggagagaatatcctttcatgatatttttattaatgt |
28931945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 28899461 - 28899243
Alignment:
| Q |
4 |
gagtataaaagaacctctgatctatcatattttgttgctgatatttgtctctc---ttctgcgttatatggcagtggatctcaagggagatagaattgtt |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||| | |||||||||||||||||||||||||||| | |||||| |
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| T |
28899461 |
gagtataaaagaacctctgatctataatattttgttactgatatttgtctttccctttct-ctttatatggcagtggatctcaagggagatggcattgtt |
28899363 |
T |
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| Q |
101 |
acgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgattttattaatgtcacctcctattaaaagctaaatggaa |
200 |
Q |
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|| | |||||||||||| |||||||||||||||| |||| |||||||||||||| |||| ||| ||||||| ||||| ||||| |||||||| | | |
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| T |
28899362 |
acaacatcgtattgatctggccaatgaaaagggacggagaagagaatatcctttcatgatatgtttgttaatgttacctcatattagaagctaaaggcca |
28899263 |
T |
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| Q |
201 |
aaatgttgtgaattggtaat |
220 |
Q |
| |
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|||| || ||||||| |||| |
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| T |
28899262 |
aaatattatgaattgttaat |
28899243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 24383812 - 24383743
Alignment:
| Q |
97 |
tgttacgaaatcgtattgatcgggccaatgaaaagggatggaggagagaatatccttttgtgatgatttt |
166 |
Q |
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|||||| ||||| |||||| ||||| ||||||||||| ||| | ||||||||||||||| |||| ||||| |
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| T |
24383812 |
tgttacaaaatcttattgaccgggcaaatgaaaagggttggcgaagagaatatccttttctgataatttt |
24383743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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