View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_1 (Length: 751)
Name: NF8535_low_1
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 10 - 734
Target Start/End: Complemental strand, 18421661 - 18420940
Alignment:
| Q |
10 |
gaagcagagaggtagtaaaaagtaaaatttctgcaaaatcttaaaaattgtgtacctcaattgctaactgaaggggactgaaggactctcttttctaggt |
109 |
Q |
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| T |
18421661 |
gaagcacagaggtagtaaaaagtaaaatttctgcaaaatcttaaaaattgtgtacctcaattgctaactgaaggggactgaaggactctcttttctaggt |
18421562 |
T |
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| Q |
110 |
tgtaaatcttactatatggttatccagtggcataaagtttgcttatatcaagaaaaacactaaaagttactttagataaacttttcaagtctgtgtaggg |
209 |
Q |
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| T |
18421561 |
tgtaaatcttactatatggttatccagtggcataaagtttggttatatcaagaaaaacactaaaagttactttagataaacttttcaagtctgtgtaggg |
18421462 |
T |
|
| Q |
210 |
nnnnnnnttgaaatcaacttggagttggtatatctttatctggaattctgattatttgagtacagaaggttttttaaactaattcaatccggcccaaaaa |
309 |
Q |
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| T |
18421461 |
aaaaaaattgaaatcaacttggagttggtatatctttatctggaattctgattatttgagtacag---gttttttaaactaattcaatccggcccaaata |
18421365 |
T |
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| Q |
310 |
tgactgtgaagcacggacacaaacattgacatctgacatgactctaatactgacacgtagatagagataataatttaagaaaatagagtgattgaatgaa |
409 |
Q |
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| T |
18421364 |
tgactgtgaagcacggacacaaacattgacatctgacatgactctaatactgacacgtagatagagataataatttaagaaaatagagtgatcgaatgaa |
18421265 |
T |
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| Q |
410 |
acaacatttgttagagtcatgccgctaaacgcactgcattaaggttgttcaaacacggacggacctagtttaatactttcttttgtcacatttataaata |
509 |
Q |
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| T |
18421264 |
acaacatttgttcgagtcatgccgctagacacactgcattaaggttgttcaaacacggacggacctagtttaatactttctttggtcacatttataaaca |
18421165 |
T |
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| Q |
510 |
aaaattcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaatatttacttataaatgtgacg |
609 |
Q |
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| T |
18421164 |
aaaattcatcaaataactggtatatcgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaatatttacttataaatgtgacg |
18421065 |
T |
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| Q |
610 |
agaatgagtactctcctttgttacttcttctgttgcaaaacaaaaattgactcaactttttatctggcaggaagagttaaaatcttctgaaggttttcaa |
709 |
Q |
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| T |
18421064 |
agaatgagtactctcctttgttacttcttcagttgcaaaacaaaaattgactcaactttttatctggcaggaagagttaaaatcttctgaaggttttcaa |
18420965 |
T |
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| Q |
710 |
ccagcttcaaaatgctgcaaagagt |
734 |
Q |
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| T |
18420964 |
ccagcttcaaaatgctgcaaagagt |
18420940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 54972773 - 54972723
Alignment:
| Q |
363 |
cacgtagatagagataataatttaagaaaatagagtgattgaatgaaacaa |
413 |
Q |
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| T |
54972773 |
cacgtagatataggtaatagtttaagaaaatagagtgattgaatgtaacaa |
54972723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 677 - 734
Target Start/End: Original strand, 51910785 - 51910842
Alignment:
| Q |
677 |
caggaagagttaaaatcttctgaaggttttcaaccagcttcaaaatgctgcaaagagt |
734 |
Q |
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| T |
51910785 |
caggaagaattgaaatctatggaaggtcttcaaccagcttcaaaatgctgcaaagagt |
51910842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 608
Target Start/End: Complemental strand, 45411051 - 45410953
Alignment:
| Q |
513 |
attcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatct---aaaaatcaatatttacttataaatgtgac |
608 |
Q |
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|||||||||||||||| | || || || |||||||||| || || ||| ||| |||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
45411051 |
attcattaaataactgatgtatcgggataatattatagtccagatatatcagttattcaacgaatctgaaaaaaaacaatatttacttataaatgtgac |
45410953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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