View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_13 (Length: 248)
Name: NF8535_low_13
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 49717649 - 49717416
Alignment:
| Q |
1 |
tttctactgggagaaagttccaacacccattcttgacacagttcaaaaccctctttgcttgaagaacctttctcagcaagaattgaaacaactagctgct |
100 |
Q |
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| T |
49717649 |
tttctactgggagaaagttccaacacccattcttgacacagttcaaaaccctctttgcttgaagaacctttctcagcaagagttgaaacaactagctgct |
49717550 |
T |
|
| Q |
101 |
gaaatccgtttagagttgtcttctattttgtcgagcacgcaaatattactgaatcctagtatggctgtggtggacctcacagttgcaatacatcatgttt |
200 |
Q |
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| T |
49717549 |
gaaatccgtttagagttgtcttctattttgtcgggcacgcaaatattactgaatcctagtatggctgtggtggacctcacagttgcaatacatcatgttt |
49717450 |
T |
|
| Q |
201 |
ttcatgctccagttgacaagattttgtgggatgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49717449 |
ttcatgctccagttgacaagattttgtgggatgt |
49717416 |
T |
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