View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_15 (Length: 245)
Name: NF8535_low_15
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32109380 - 32109152
Alignment:
| Q |
1 |
gttagtccatattcaggacaattctagtgtctaaactctaattttaaggactaaaatgaccctgattgttaataaccattatgatcgtctatactagctt |
100 |
Q |
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| T |
32109380 |
gttagtccatattcaggagaattgtagtgtctaaactctaattttaaggactaaaatgaccctgattgttaatgaccattatgatcgtctatactagctt |
32109281 |
T |
|
| Q |
101 |
cgaaaaaacatggttcccaaggaaatgctcaagtatattcatcgtactcattatggtacatagtaagtatgaatcccagtatacttatagcatacagact |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32109280 |
cgaaaaaatttggttcccaaggaaatgctcaagtatattcatcgtactcattatggtacatagtaagtatgaatcccagtatacttatagcatacagact |
32109181 |
T |
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| Q |
201 |
tgagatccaagttctagaaaagatagtga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32109180 |
tgagatccaagttctagaaaagatagtga |
32109152 |
T |
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