View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_16 (Length: 241)
Name: NF8535_low_16
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2264691 - 2264467
Alignment:
| Q |
1 |
taactttatgtggttagaggtgtaagtcaacaactcaatgccatgtaatagagactaatttgtccggattttgaaagaaattggaaatcaaattttcatt |
100 |
Q |
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| T |
2264691 |
taactttatgtggttagaggcgtaagtcaacaactcaatgccatgtaatagagactaatttgtccggattttgaaagaaattggaaatcaaattttcatt |
2264592 |
T |
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| Q |
101 |
tcgacatcactttt-gtctcattttctcctttcaacaattgatctgatcttcttcatcacttcatttctgatcgtcccccatacaatcaatttggatcgg |
199 |
Q |
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| T |
2264591 |
tccacataactttttgtctcattttctcctttcaacaattgatctgatcttcttcatcacttcatttctgatcgtcccccatacaatcaatttggatcgg |
2264492 |
T |
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| Q |
200 |
tttttcagaaaaataaatccaaacc |
224 |
Q |
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| T |
2264491 |
tttttcagaaaaataaatccaaacc |
2264467 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 34399680 - 34399731
Alignment:
| Q |
31 |
caactcaatgccatgtaatagagactaatttgtccggattttgaaagaaattg |
83 |
Q |
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||||||| || || |||||| ||||||||||||| |||||||||||||||||| |
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| T |
34399680 |
caactcattgtcacgtaataaagactaatttgtc-ggattttgaaagaaattg |
34399731 |
T |
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