View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_17 (Length: 240)
Name: NF8535_low_17
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 11746299 - 11746405
Alignment:
| Q |
4 |
gatatacaatatttgaaaaaagaaacgactgtaattgattgataaaactgagggctaatttgattcattcatatgtgaatcgtgaaagtaatatagagga |
103 |
Q |
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| T |
11746299 |
gatatacaatatttgaaaaaagaaacgactgtaattgtttgataaaactgagggctaatttgattcattcatatgtgaatcgtgaaagtaatatagagga |
11746398 |
T |
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| Q |
104 |
ctgtaat |
110 |
Q |
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| T |
11746399 |
ctgtaat |
11746405 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 11746403 - 11746490
Alignment:
| Q |
138 |
aatagctattttgtattgttgagagaactacaatagctaattaaatatgtaaaaataaaactatagttctaggtctcttgttgcttct |
225 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11746403 |
aatatctattttgtattgttgagagaactacaatagctaattaaatatgtaaaaataaaactatagttctaggtctcttgttgcttct |
11746490 |
T |
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