View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_18 (Length: 240)
Name: NF8535_low_18
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9967153 - 9967368
Alignment:
| Q |
16 |
agcacagaagtcttgtatattttc-ttagtagtgcatctgctgaagtatttgccaatttagctctatgtccatttgaagctgttaaagtcagggttcaag |
114 |
Q |
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| T |
9967153 |
agcacagaagtcttgtatattttccttagtagtgcatctgctgaagtatttgccaatttagctctatgtccatttgaagctgttaaagtcagggttcaag |
9967252 |
T |
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| Q |
115 |
cacaacctagttatgctaagggcatgtttgacggctttccaaaggtatatgcagctgaaggcgcacgagggtaaagaaagatttcaatatgttcgtttac |
214 |
Q |
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| T |
9967253 |
cacaacctagttatgctaagggcatgtttgacggctttccaaaggtatatgcagctgaaggcgcacgagggtaaagaaagatttcaatatgttcgtttac |
9967352 |
T |
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| Q |
215 |
tacttgatgtccatct |
230 |
Q |
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| T |
9967353 |
tacttgatgtccatct |
9967368 |
T |
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