View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_20 (Length: 228)
Name: NF8535_low_20
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45320478 - 45320696
Alignment:
| Q |
1 |
tataaaaccttcccaccatgggaaatgtgcttttttacctgcaatagcctgttaaacaagttgccattggttttgtttggaattgaagctgagacaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320478 |
tataaaaccttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattgaagctgagacaaaaa |
45320577 |
T |
|
| Q |
101 |
atgattaatgacttattatattatattgtgaaccacacctcccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacggtagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320578 |
atgattaatgacttattatattatattgtgaaccacacctcccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacggtagca |
45320677 |
T |
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| Q |
201 |
gctccactccattcttctc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
45320678 |
gctccactccattcttctc |
45320696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41466235 - 41466457
Alignment:
| Q |
1 |
tataaaaccttcccaccatgggaaatgtgcttttttacctgcaatagcctgttaaacaagttgccattggttttgtttggaattgaagctgagacaaaaa |
100 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
41466235 |
tataaaaccttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagctgagacaaaaa |
41466334 |
T |
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| Q |
101 |
atgattaatgacttattatattatattgtgaaccacacctcccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacggta--- |
197 |
Q |
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| T |
41466335 |
atgattaataacttattatattatattgtgaactacacctcccattttttaaaaataactatccacaccacaaaatccaaacacacaaaacacggtagca |
41466434 |
T |
|
| Q |
198 |
-gcagctccactccattcttctc |
219 |
Q |
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|||||||||||||||||||||| |
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| T |
41466435 |
ggcagctccactccattcttctc |
41466457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 12139158 - 12138971
Alignment:
| Q |
10 |
ttcccaccatgggaaatgtgcttttttacctgcaatagcctgttaaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaat |
109 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12139158 |
ttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattaat |
12139059 |
T |
|
| Q |
110 |
gacttattatattatattgtgaaccacacct-cccattcttaaaaaataactattcacaccacaaaatccaaacacacaaaacacggt |
196 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
12139058 |
gacttattatattatattgtgaactacacctccccattcttaaaaaataactatccacaccacaaaatccacacacaaaaaacacggt |
12138971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26520892 - 26521004
Alignment:
| Q |
8 |
ccttcccaccatgggaaatgtgcttttttacctgcaatagcctgttaaacaagttgccattggttttgtttggaattgaagctgagac-aaaaaatgatt |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
26520892 |
ccttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgtttggaattgcacttgagacaaaaaaatgatt |
26520991 |
T |
|
| Q |
107 |
aat-gacttatta |
118 |
Q |
| |
|
||| ||||||||| |
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| T |
26520992 |
aatggacttatta |
26521004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 34826737 - 34826626
Alignment:
| Q |
8 |
ccttcccaccatgggaaatgtgcttttttacctgcaatagcctgttaaacaagttgccattggttttgtttggaattgaagctgagacaa-aaaatgatt |
106 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
34826737 |
cctttccactatgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgtttggaattgcacttgagacaaaaaaatgatt |
34826638 |
T |
|
| Q |
107 |
aatgacttatta |
118 |
Q |
| |
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|||||||||||| |
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| T |
34826637 |
aatgacttatta |
34826626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 29059268 - 29059388
Alignment:
| Q |
54 |
aaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaa-tgacttattatattatattgtgaaccacacctcccattcttaaa |
152 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| | | || |||||||| ||||| | |||||||||| || ||||||||| |||||||||||| | ||| |
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| T |
29059268 |
aaacatgttgacattggttttgtttggtatttcacttcagccaaaaaatcattaaataacttattatactaaattgtgaactacacctcccatt-taaaa |
29059366 |
T |
|
| Q |
153 |
aaataactattcacaccacaaa |
174 |
Q |
| |
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||| ||||| ||||||||||| |
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|
| T |
29059367 |
aaagtactatccacaccacaaa |
29059388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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