View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8535_low_22 (Length: 211)
Name: NF8535_low_22
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8535_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 44927540 - 44927718
Alignment:
| Q |
12 |
tgagaagaaggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtgga |
111 |
Q |
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| T |
44927540 |
tgagaagagggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtgga |
44927639 |
T |
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| Q |
112 |
agcgaccttaaggttcagtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctctt |
192 |
Q |
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| T |
44927640 |
agcgaccttaaggttcagtttgtttgtcattctctttttc--atattccctgcttctggtttgtcgtgataatgatctctt |
44927718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 45989388 - 45989518
Alignment:
| Q |
21 |
ggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgacctt |
120 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
45989388 |
ggaaactatcttgaaaactcttctagctaaggataaacatgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagtgatctt |
45989487 |
T |
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| Q |
121 |
aaggttcagtttgtttgtcattctctttttc |
151 |
Q |
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| T |
45989488 |
aaggttcattttgttggtcattctctatttc |
45989518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 45994238 - 45994349
Alignment:
| Q |
21 |
ggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacag----aaggatatagtggaagcga |
116 |
Q |
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| T |
45994238 |
ggaaacaatcttgaaaactcttatagctaaggataaacatgaagatttagacttcaaagagctttcaactatgacagaattaaggatacagtggaagtga |
45994337 |
T |
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| Q |
117 |
ccttaaggttca |
128 |
Q |
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||||||||||| |
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| T |
45994338 |
tcttaaggttca |
45994349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 44936008 - 44936113
Alignment:
| Q |
21 |
ggaaacgatcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgacctt |
120 |
Q |
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|||||| |||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||| |
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| T |
44936008 |
ggaaacaatcttgaaaactattctagctaaggaaaaatctgaaaatatgaacttcgaagagctttcaactatgacagaaggatatagcggaagtgatctt |
44936107 |
T |
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| Q |
121 |
aaggtt |
126 |
Q |
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|||||| |
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| T |
44936108 |
aaggtt |
44936113 |
T |
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