View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8535_low_6 (Length: 389)

Name: NF8535_low_6
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8535_low_6
NF8535_low_6
[»] chr5 (9 HSPs)
chr5 (19-293)||(10519550-10519825)
chr5 (292-349)||(10519918-10519975)
chr5 (174-246)||(33953152-33953224)
chr5 (189-263)||(8230756-8230830)
chr5 (189-284)||(28975602-28975695)
chr5 (170-209)||(9956627-9956666)
chr5 (170-288)||(3622155-3622273)
chr5 (174-278)||(17250433-17250534)
chr5 (158-220)||(37484824-37484886)
[»] chr8 (11 HSPs)
chr8 (167-294)||(44132820-44132947)
chr8 (178-288)||(1898050-1898160)
chr8 (156-257)||(226330-226429)
chr8 (156-257)||(702743-702842)
chr8 (156-257)||(739953-740052)
chr8 (156-257)||(863848-863947)
chr8 (189-291)||(15135965-15136066)
chr8 (170-228)||(35910600-35910658)
chr8 (192-285)||(33681230-33681322)
chr8 (156-209)||(42127215-42127268)
chr8 (236-288)||(6473922-6473974)
[»] chr4 (10 HSPs)
chr4 (167-294)||(50041761-50041888)
chr4 (167-294)||(50048983-50049110)
chr4 (170-246)||(52198368-52198444)
chr4 (189-291)||(34765127-34765229)
chr4 (171-219)||(53363694-53363742)
chr4 (170-259)||(36498581-36498670)
chr4 (170-209)||(33913969-33914008)
chr4 (174-216)||(5052112-5052154)
chr4 (179-213)||(52673226-52673260)
chr4 (183-284)||(44015369-44015470)
[»] chr7 (6 HSPs)
chr7 (170-257)||(22715800-22715887)
chr7 (155-228)||(27311787-27311860)
chr7 (192-288)||(43279250-43279345)
chr7 (189-228)||(23021207-23021246)
chr7 (175-209)||(42691101-42691135)
chr7 (157-209)||(42971675-42971727)
[»] chr1 (11 HSPs)
chr1 (156-259)||(17368378-17368481)
chr1 (177-246)||(26056817-26056886)
chr1 (170-266)||(11872163-11872259)
chr1 (170-262)||(37719064-37719156)
chr1 (167-246)||(19431385-19431464)
chr1 (189-219)||(40717638-40717668)
chr1 (156-216)||(7537008-7537068)
chr1 (157-209)||(19456342-19456394)
chr1 (157-209)||(48915017-48915069)
chr1 (157-209)||(48915207-48915259)
chr1 (157-209)||(48915408-48915460)
[»] chr2 (7 HSPs)
chr2 (175-289)||(28640092-28640206)
chr2 (156-291)||(21835992-21836125)
chr2 (156-209)||(1208622-1208675)
chr2 (169-257)||(8209312-8209400)
chr2 (170-216)||(5455872-5455918)
chr2 (189-219)||(7261196-7261226)
chr2 (156-201)||(14818714-14818759)
[»] chr6 (5 HSPs)
chr6 (170-289)||(24226078-24226199)
chr6 (156-284)||(6793500-6793627)
chr6 (172-252)||(512765-512845)
chr6 (170-218)||(28067332-28067380)
chr6 (157-209)||(22469706-22469758)
[»] scaffold0176 (1 HSPs)
scaffold0176 (157-209)||(15098-15150)
[»] chr3 (1 HSPs)
chr3 (157-209)||(39972999-39973051)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 10519550 - 10519825
Alignment:
Q  19 tgtgtaattgattgtctgtgt-gatactgttaccaagaagaagnnnnnnnn-gagagaagggtacatctgtgtatatgatgagctgcgctctttcctctt 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10519550 tgtgtaattgattgtctgtgttgatactgttaccaagaagaagaaaaaaaaagagagaagggtacatctgtgtatataatgagctgcgctctttcctctt 10519649  T
Q  117 tgtcatcccaaatccctaattcagctttcttggggtgcactctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  10519650 tgtcatcccaaatccctaattcagctttcttggggtgcactctatctccttcttaaccaataattatct-tgatcaaaataatttattttagttatttat 10519748  T
Q  217 ctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagtatttcccca 293  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  10519749 ctaccactctcttgcatcaaaaatacactacagtcaccaaagttaccaaaactcaaagtcactcaagtattttccca 10519825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 10519918 - 10519975
Alignment:
Q  292 catgtctatcgcaccgaccgttttatctcgacaaaccctaattcccaattcacccgca 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10519918 catgtctatcgcaccgaccgttttatctcgacaaaccctaattcccaattcacccgca 10519975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 33953152 - 33953224
Alignment:
Q  174 caataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacacta 246  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||| |||| |||||  |||| |||||||||||    
T  33953152 caataattctctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaatacacta 33953224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 8230830 - 8230756
Alignment:
Q  189 atcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttacc 263  Q
    ||||||||||||||||||||| |||||   | ||||||||| |||| ||||||||||| |||||| |||||||||    
T  8230830 atcaaaataatttattttaatcatttaatcatcactctctttcatctaaaatacactaaagtcattaaagttacc 8230756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 28975602 - 28975695
Alignment:
Q  189 atcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagt 284  Q
    ||||||||||||||||||||| |||||| || || | |||| ||||  ||||| |||| | ||||||| || |||||||||||||||||| |||||    
T  28975602 atcaaaataatttattttaatcatttatttatcattttctttcatc--aaatatactaaaatcatcaatgtcaccaaaactcaaagtcacccaagt 28975695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 9956627 - 9956666
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9956627 taaccaataattctctctcatcaaaataatttattttaat 9956666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 3622273 - 3622155
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaact 269  Q
    |||||||||||| ||||| ||||||||||||||||||||| | |  | || || ||||   |||| ||||||||||| | | | |||||| |||||||      
T  3622273 taaccaataattttctctcatcaaaataatttattttaatcactcgtatatcattctcactcatctaaaatacactaaaattaccaaagtcaccaaaatg 3622174  T
Q  270 caaagtcactcaagtattt 288  Q
     ||||||||||||||||||    
T  3622173 taaagtcactcaagtattt 3622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 17250534 - 17250433
Alignment:
Q  174 caataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaa 273  Q
    |||| ||| ||||| |||||||||||||| |||||| ||| ||||| || |||||| |||| |||||||| || ||| |||||||| | |||||||||||    
T  17250534 caatcattttctctcatcaaaataatttactttaatcattcatctatcattctctttcatc-aaaataca-ta-agttatcaaagtcatcaaaactcaaa 17250438  T
Q  274 gtcac 278  Q
    |||||    
T  17250437 gtcac 17250433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 37484824 - 37484886
Alignment:
Q  158 ctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctac 220  Q
    ||||||| ||| |||| ||||||| ||| | ||||||||||||||||||||| ||| ||||||    
T  37484824 ctatctctttcataactaataattttctttcatcaaaataatttattttaatcattcatctac 37484886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 44132947 - 44132820
Alignment:
Q  167 tcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaa 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| || | |||  |||| ||||||||||| ||||| |||| | ||||||    
T  44132947 tcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaatacactaaagtcaccaaaatcaccaaa 44132848  T
Q  267 actcaaagtcactcaagtatttccccat 294  Q
    |  |||||||| ||||||||||||||||    
T  44132847 atgcaaagtcattcaagtatttccccat 44132820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 1898160 - 1898050
Alignment:
Q  178 aattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtca 277  Q
    |||||||| | ||||||||||||||||||||| | |||| || || |||||  |||| |||||| |||| |||||||||||| | |||||  |||| |||    
T  1898160 aattctcttttatcaaaataatttattttaatcagttatatatcattctctctcatctaaaatatactaaagtcatcaaagtcatcaaaatgcaaaatca 1898061  T
Q  278 ctcaagtattt 288  Q
    |||||||||||    
T  1898060 ctcaagtattt 1898050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 226429 - 226330
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||||||||  || |||| ||||||||||||  ||||| ||||||||||||||| ||| |  ||  |||||||| |||| ||||||||||| ||||| ||    
T  226429 ctctatctctctcctaactaataattctctc--atcaacataatttattttaatcattcaattataactctctttcatctaaaatacactaaagtcacca 226332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 702842 - 702743
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||||||||  || |||| ||||||||||||  ||||| ||||||||||||||| ||| |  ||  |||||||| |||| ||||||||||| ||||| ||    
T  702842 ctctatctctctcctaactaataattctctc--atcaacataatttattttaatcattcaattataactctctttcatctaaaatacactaaagtcacca 702745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 740052 - 739953
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||||||||  || |||| ||||||||||||  ||||| ||||||||||||||| ||| |  ||  |||||||| |||| ||||||||||| ||||| ||    
T  740052 ctctatctctctcctaactaataattctctc--atcaacataatttattttaatcattcaattataactctctttcatctaaaatacactaaagtcacca 739955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 863947 - 863848
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||||||||  || |||| ||||||||||||  ||||| ||||||||||||||| ||| |  ||  |||||||| |||| ||||||||||| ||||| ||    
T  863947 ctctatctctctcctaactaataattctctc--atcaacataatttattttaatcattcaattataactctctttcatctaaaatacactaaagtcacca 863850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 15135965 - 15136066
Alignment:
Q  189 atcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagtattt 288  Q
    ||||||||||||||||||||| | | ||||| |||| |||   ||| ||||||||||| ||||| |||||| || ||||  |||| ||| ||||||||||    
T  15135965 atcaaaataatttattttaatcactcatctatcactttctcttatctaaaatacacta-agtcaccaaagtcacaaaaatacaaaatcattcaagtattt 15136063  T
Q  289 ccc 291  Q
    |||    
T  15136064 ccc 15136066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 35910600 - 35910658
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctct 228  Q
    ||||||||||||| |||| |||||||| |||||||||||| ||| || || ||||||||    
T  35910600 taaccaataattccctctcatcaaaatgatttattttaatcattcatttatcactctct 35910658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 33681322 - 33681230
Alignment:
Q  192 aaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagta 285  Q
    |||||||||||||||||| ||||||||| || |||||  |||| ||||||||||| ||||  ||| || |||| |||| || ||||| ||||||    
T  33681322 aaaataatttattttaatcatttatctatcattctctcacatc-aaaatacactaaagtcgccaatgtcaccataactaaatgtcacccaagta 33681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 42127268 - 42127215
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||| ||||| || |||||||||||| | ||| |||||||||||||||||||||    
T  42127268 ctctctctccctcctaaccaataattatttctcatcaaaataatttattttaat 42127215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 6473974 - 6473922
Alignment:
Q  236 aaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagtattt 288  Q
    ||||||||||| |||||| |||||||| ||||  |||||||| ||||||||||    
T  6473974 aaaatacactaaagtcattaaagttacaaaaatacaaagtcattcaagtattt 6473922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 50041888 - 50041761
Alignment:
Q  167 tcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaa 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| || | |||  |||| |||| |||||| ||||| |||| | ||||||    
T  50041888 tcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaagtcaccaaaatcaccaaa 50041789  T
Q  267 actcaaagtcactcaagtatttccccat 294  Q
    |  |||||||| ||||||||||||||||    
T  50041788 atgcaaagtcattcaagtatttccccat 50041761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 50049110 - 50048983
Alignment:
Q  167 tcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaa 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| || | |||  |||| |||| |||||| ||||| |||| | ||||||    
T  50049110 tcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaagtcaccaaaatcaccaaa 50049011  T
Q  267 actcaaagtcactcaagtatttccccat 294  Q
    |  |||||||| ||||||||||||||||    
T  50049010 atgcaaagtcattcaagtatttccccat 50048983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 52198368 - 52198444
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacacta 246  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||| || | |||  |||| |||||||||||    
T  52198368 taaccaataattatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaatacacta 52198444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 34765127 - 34765229
Alignment:
Q  189 atcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagtattt 288  Q
    ||||||||| |||||| |||| |  |||||| || |||||| |||  ||||||||||| |||| ||||| | |||||||  |||||||||||||||||||    
T  34765127 atcaaaatagtttattataatcacatatctatcattctctttcatataaaatacactaaagtcgtcaaaatcaccaaaatgcaaagtcactcaagtattt 34765226  T
Q  289 ccc 291  Q
    |||    
T  34765227 ccc 34765229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 53363742 - 53363694
Alignment:
Q  171 aaccaataattctctctgatcaaaataatttattttaattatttatcta 219  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  53363742 aaccaattattctttctcatcaaaataatttattttaattatttatcta 53363694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 36498670 - 36498581
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagt 259  Q
    |||||||||||||||||  ||||||||||||||||||||| | | ||||| ||  ||||  |||| ||||||||||| | | ||||||||    
T  36498670 taaccaataattctctcacatcaaaataatttattttaatcactcatctatcatcctctctcatctaaaatacactaaaattatcaaagt 36498581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 33913969 - 33914008
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  33913969 taaccaataattctctctcatcaaaatgatttattttaat 33914008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 5052112 - 5052154
Alignment:
Q  174 caataattctctctgatcaaaataatttattttaattatttat 216  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||    
T  5052112 caatcattctctctcatcaaaataatttattttaatcatttat 5052154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 52673260 - 52673226
Alignment:
Q  179 attctctctgatcaaaataatttattttaattatt 213  Q
    ||||||||| |||||||||||||||||||||||||    
T  52673260 attctctctcatcaaaataatttattttaattatt 52673226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 44015470 - 44015369
Alignment:
Q  183 tctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaa 282  Q
    ||||| ||| ||||||||||||||||| ||| ||||| || ||| |  |||| |||||||||||  |||| ||| ||||||||||  | | |||||||||    
T  44015470 tctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaatacactaatgtcaccaatgttaccaaaaagctatgtcactcaa 44015371  T
Q  283 gt 284  Q
    ||    
T  44015370 gt 44015369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 22715887 - 22715800
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaa 257  Q
    |||| ||||||| |||||  |||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||||||    
T  22715887 taacaaataattttctctcgtcaaaataatttattttaatcatttatctatcactctctttcatctaaaatacactaaagtcatcaaa 22715800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 27311860 - 27311787
Alignment:
Q  155 actctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctct 228  Q
    ||||||||||  ||||||| ||||||||||||  |||||||||| |||||||||| ||| ||||| ||||||||    
T  27311860 actctatctctctcttaactaataattctctcacatcaaaataaattattttaatcattcatctatcactctct 27311787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 43279250 - 43279345
Alignment:
Q  192 aaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaagtcactcaagtattt 288  Q
    |||||||||||||||||| ||| ||||| || |||||| |||| ||||||||||| | |||  |||||||| ||||||| |||| || |||||||||    
T  43279250 aaaataatttattttaatcattcatctatcattctcttccatc-aaaatacactaaaatcactaaagttacaaaaactctaagtaacccaagtattt 43279345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 23021207 - 23021246
Alignment:
Q  189 atcaaaataatttattttaattatttatctaccactctct 228  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  23021207 atcaaaataatttattttaatcatttatctatcactctct 23021246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 42691135 - 42691101
Alignment:
Q  175 aataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||||||| |||||||||||||||||||||    
T  42691135 aataattctctctcatcaaaataatttattttaat 42691101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 42971727 - 42971675
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  |||||||||  |||||||||| ||| |||||||||||||||||    
T  42971727 tctatctctctcttaaccatcaattctctctcatctaaataatttattttaat 42971675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 17368481 - 17368378
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |   | ||||||||| |||| ||||||||||| ||||| ||    
T  17368481 ctctgtctctttcctaaccaataattctctctcatcaaaataatttattttaattattcaatcatcactctctttcatctaaaatacactaaagtcaaca 17368382  T
Q  256 aagt 259  Q
    ||||    
T  17368381 aagt 17368378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 26056817 - 26056886
Alignment:
Q  177 taattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacacta 246  Q
    ||||||||| | || |||||||||||||||||||||||||||| |||||| |  |||| |||||||||||    
T  26056817 taattctcttttattaaaataatttattttaattatttatctatcactctatctcatctaaaatacacta 26056886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 11872259 - 11872163
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaa 266  Q
    |||||||||||||||||| |||||||||||||||| |||| ||| |   | || |||||| |||| ||||||||||| | ||| |||||| ||||||    
T  11872259 taaccaataattctctctcatcaaaataatttattataatcattcaatcatcattctctttcatctaaaatacactaaaatcaacaaagtcaccaaa 11872163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 37719064 - 37719156
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattattt-atctaccactctcttgcatcaaaaatacactacagtcatcaaagttac 262  Q
    |||||||||||| ||||| ||||||||||||||||||| | |||| ||| | |||||| || |||| |||||| |||| ||| |||||||||||    
T  37719064 taaccaataattatctctcatcaaaataatttattttattcatttcatc-atcactctttttcatctaaaatatactaaagttatcaaagttac 37719156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 19431464 - 19431385
Alignment:
Q  167 tcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacacta 246  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||| ||| ||| | || ||| |  |||| |||||||||||    
T  19431464 tcttaaccaatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaatacacta 19431385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 40717638 - 40717668
Alignment:
Q  189 atcaaaataatttattttaattatttatcta 219  Q
    |||||||||||||||||||||||||||||||    
T  40717638 atcaaaataatttattttaattatttatcta 40717668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 7537068 - 7537008
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttat 216  Q
    |||||||||  || |||||||| | ||||| | ||||||||||||||||||||| ||||||    
T  7537068 ctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcatttat 7537008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19456394 - 19456342
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||||||| |||||||| | | ||||||||| ||| |||||||||||||||||    
T  19456394 tctatctctttcttaacaattcattctctctcatctaaataatttattttaat 19456342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 48915069 - 48915017
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  ||||||| | | ||||||||| |||||||||||||||||||||    
T  48915069 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaat 48915017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 48915259 - 48915207
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  ||||||| | | ||||||||| |||||||||||||||||||||    
T  48915259 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaat 48915207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 48915460 - 48915408
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  ||||||| | | ||||||||| |||||||||||||||||||||    
T  48915460 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaat 48915408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 28640206 - 28640092
Alignment:
Q  175 aataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaagttaccaaaactcaaag 274  Q
    ||||| ||||| | ||||||||||||||||||||| ||| ||||| || |||||| |||| ||||||||||| ||||| |||||| ||| || |||||||    
T  28640206 aataactctcttttatcaaaataatttattttaatcattcatctatcattctctttcatctaaaatacactaaagtcaccaaagtcacccaacctcaaag 28640107  T
Q  275 tcactcaagtatttc 289  Q
    ||||  |||||||||    
T  28640106 tcacagaagtatttc 28640092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 21835992 - 21836125
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    ||||||||| ||| |||||||||||| |  || ||||||||||||||||||||| | | ||||| || |||||  | ||  |||||||||| ||||||||    
T  21835992 ctctatctctttcctaaccaataatttttcctcatcaaaataatttattttaatcactcatctatcattctct--cttctgaaatacactaaagtcatca 21836089  T
Q  256 aagttaccaaaactcaaagtcactcaagtatttccc 291  Q
    |||| || ||||  || | |||||||||||||||||    
T  21836090 aagtcacgaaaatgcagaatcactcaagtatttccc 21836125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 1208622 - 1208675
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||||||||  ||||||||||||||||||||| || ||||||||||||||||||    
T  1208622 ctctatctctctcttaaccaataattctctctcattaaaataatttattttaat 1208675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 8209312 - 8209400
Alignment:
Q  169 ttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatcaaa 257  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||| || ||||| ||| ||  ||||||| || |||| ||||| ||||    
T  8209312 ttaatcaataattctctctcatcaaaataatttattttaatcattcatttaccattcttttttatcaaaagtatactaaagtcaccaaa 8209400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 5455872 - 5455918
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttat 216  Q
    |||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  5455872 taacaaataattctctctcaccaaaataatttattttaatcatttat 5455918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 7261196 - 7261226
Alignment:
Q  189 atcaaaataatttattttaattatttatcta 219  Q
    |||||||||||||||||||||||||||||||    
T  7261196 atcaaaataatttattttaattatttatcta 7261226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 14818714 - 14818759
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataattt 201  Q
    |||||||||  || |||||||||||||||||| |||||||||||||    
T  14818714 ctctatctctctcataaccaataattctctctcatcaaaataattt 14818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 24226078 - 24226199
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactaca--gtcatcaaagttaccaaaa 267  Q
    |||||||||||||||| | ||||||||||||||||||||| ||| ||||| || | |||  |||| ||||||| ||| |  ||||  ||||| |||||||    
T  24226078 taaccaataattctctgtcatcaaaataatttattttaatcattcatctatcattttctctcatctaaaatactctaaattgtcacaaaagtcaccaaaa 24226177  T
Q  268 ctcaaagtcactcaagtatttc 289  Q
      ||||||||||||||||||||    
T  24226178 tacaaagtcactcaagtatttc 24226199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 6793500 - 6793627
Alignment:
Q  156 ctctatctccttcttaaccaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtcatca 255  Q
    |||||||||  || |||||||||||| ||||| ||||||||||||||||||||| | | ||||| |  |||||  |||| ||||||||||| ||||| ||    
T  6793500 ctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatcactcatctatcgttctctctcatctaaaatacactaaagtcacca 6793599  T
Q  256 aagttaccaaaactcaaagtcactcaagt 284  Q
    |||| | || ||| |||||||||| ||||    
T  6793600 aagtca-cataacacaaagtcactgaagt 6793627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 512765 - 512845
Alignment:
Q  172 accaataattctctctgatcaaaataatttattttaattatttatctaccactctcttgcatcaaaaatacactacagtca 252  Q
    ||||||| |||||||| ||||||||||||||||||||| | | |||||  | |||||  |||| ||||||||||| |||||    
T  512765 accaatatttctctctcatcaaaataatttattttaatcactcatctattattctctctcatctaaaatacactaaagtca 512845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 28067332 - 28067380
Alignment:
Q  170 taaccaataattctctctgatcaaaataatttattttaattatttatct 218  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||| ||||    
T  28067332 taaccaatcattctctctcatcaaaataatttattttaatcattcatct 28067380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 22469706 - 22469758
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    |||||||| |||||||| | | ||||||||| ||| |||||||||||||||||    
T  22469706 tctatctctttcttaacaactcattctctctcatctaaataatttattttaat 22469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 15098 - 15150
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  ||||||| | | ||||||||| |||||||||||||||||||||    
T  15098 tctatctctatcttaacaactcattctctctcatcaaaataatttattttaat 15150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 39972999 - 39973051
Alignment:
Q  157 tctatctccttcttaaccaataattctctctgatcaaaataatttattttaat 209  Q
    ||||||||  ||||||| | | ||||||||| |||||||||||||||||||||    
T  39972999 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaat 39973051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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