View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8535_low_9 (Length: 302)

Name: NF8535_low_9
Description: NF8535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8535_low_9
NF8535_low_9
[»] chr3 (1 HSPs)
chr3 (22-302)||(49717630-49717913)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 49717913 - 49717630
Alignment:
Q  22 gccaaattgcagtctcatacggtctattgattcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatg 121  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49717913 gccaaattgtagtctcatacggtcaattgattcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatg 49717814  T
Q  122 ggtactgtttgtgctagatacccatttgtaatccctttccattcccaaaccctaactcgcagattggattgctcaatatcccaattccccctttccagaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49717813 ggtactgtttgtgctagatacccatttgtaatccctttccattcccaaaccctaactcgcagattggattgctcaatctcccaattccccctttccagaa 49717714  T
Q  222 tcacctattcttc---ttctagaatcttaattcatcgagtatgttcacgacctgatattgatgatttctactgggagaaagttc 302  Q
    |||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49717713 tcacatattcttcttcttctagaatcttaattcatcgagtatgttcacgacctgatattgatgatttctactgggagaaagttc 49717630  T

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