View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_high_11 (Length: 252)
Name: NF8536_high_11
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6751934 - 6752144
Alignment:
| Q |
1 |
tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6751934 |
tggagtgcagatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa |
6752033 |
T |
|
| Q |
101 |
acatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccacttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6752034 |
acatgtctttcttgctcctccctatcatggaaggaaggccgagatatttatcgatttcaattgcaatgttgacttgtaagatatttgatatgttcacttt |
6752133 |
T |
|
| Q |
201 |
ggcttctgcac |
211 |
Q |
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||||||||||| |
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| T |
6752134 |
ggcttctgcac |
6752144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6466592 - 6466502
Alignment:
| Q |
1 |
tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa |
91 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6466592 |
tggagtatatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttccttcatacttggtccttaa |
6466502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6956657 - 6956867
Alignment:
| Q |
1 |
tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| | | |||||||||||||||| |
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| T |
6956657 |
tggagtacagatttaatcatcacctcttttcccgccgtagataaagagcgtcatccccatgacttgatcttcctccatattcgatccttaatgaatttaa |
6956756 |
T |
|
| Q |
101 |
acatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccacttt |
200 |
Q |
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||| ||||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
6956757 |
acaagtctttcttgctcctccctgtcatggaaggaaggtcgagatatttaccggttccaattgcaatgttgacttgtaagatattcgatatgttcacttt |
6956856 |
T |
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| Q |
201 |
ggcttctgcac |
211 |
Q |
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||||||||||| |
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| T |
6956857 |
ggcttctgcac |
6956867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 21272950 - 21273118
Alignment:
| Q |
11 |
atttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatgaatttaaacatgtcttt |
110 |
Q |
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|||||||||||| || ||||||| ||||||||||||||||||||||||| || || ||||||||||| ||| |||||||||| ||||||||||||| || |
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| T |
21272950 |
atttaatcatcaacttttttcccaccttagataaagagcgtcctccccacgagttaatcttcctccacactcagtccttaatgtatttaaacatgtcctt |
21273049 |
T |
|
| Q |
111 |
cttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaa |
179 |
Q |
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|||| ||||||||||||||||||||| || ||||||||| || || | ||||||||||||| |||||| |
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| T |
21273050 |
cttgttcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa |
21273118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22010090 - 22010170
Alignment:
| Q |
1 |
tggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatact |
81 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |
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| T |
22010090 |
tggagtacagatttaatcatcaccacttttcccgccttagataaagagcgccctcccctagagttgatcttcctccatact |
22010170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 22010176 - 22010260
Alignment:
| Q |
121 |
cctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggctt |
205 |
Q |
| |
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||||||| ||||||||||| || ||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
22010176 |
cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaagatattcaatatgtttactttggctt |
22010260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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