View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_high_12 (Length: 240)
Name: NF8536_high_12
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_high_12 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6751921 - 6751698
Alignment:
| Q |
1 |
ctattttatgagtattttcc-gattccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggagaaatggtggaaatagaaataag |
99 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6751921 |
ctattttatgagtatttttctgattccctcatctcttggtgatgaaatcgaaaaaatgatgaattctttttggtggggaaatggtggaaatagaaataag |
6751822 |
T |
|
| Q |
100 |
ggaatcaggtagctttcatgggacaagttatgtgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggca |
199 |
Q |
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|||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6751821 |
ggaatcaggtggctttcatggtacaagttatatgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggca |
6751722 |
T |
|
| Q |
200 |
agcaagtctggcggttaatgtgtc |
223 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
6751721 |
agcaagtttggcggttaatgtgtc |
6751698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6466605 - 6466828
Alignment:
| Q |
1 |
ctattttatgagtattttcc-gattccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggagaaatggtggaaatagaaataag |
99 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| |
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| T |
6466605 |
ctattttataagtatttttttgattccctcatctcttggtgatgaaatcgagaaaatcatgaattatttttggtgggaaaatggtggaaatagaaataag |
6466704 |
T |
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| Q |
100 |
ggaatcaggtagctttcatgggacaagttatgtgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggca |
199 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
6466705 |
ggaatcaggtggctttcatgggacaagttatatgtccataaaagaagccgtggtatgggttttaagaatttatatatgttcaatatggcacttcatgaca |
6466804 |
T |
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| Q |
200 |
agcaagtctggcggttaatgtgtc |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
6466805 |
agcaagtctggcggttaatgtgtc |
6466828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 13501824 - 13501861
Alignment:
| Q |
38 |
gtgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
13501824 |
gtgatgaaattgagaaaatgatgaattctttttggtgg |
13501861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 22010055 - 22009857
Alignment:
| Q |
22 |
attccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggagaaatggtggaaatagaaataagggaatcaggtagctttcatggg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22010055 |
attccctcatctcttggtgatgaaatcgagaaaatgatgaattctttatggtagggaaatggtggaaatagaaataagggaatcaggtggctttcatggg |
22009956 |
T |
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| Q |
122 |
acaagttatgtgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggcaagcaagtctggcggttaatgt |
220 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22009955 |
acaaattatttgtccataaaagaaatggtggtatgggttttaagaatttatatttgttcaatatggcacttcttggcaatcaagtctggcggttaatgt |
22009857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 21503517 - 21503554
Alignment:
| Q |
38 |
gtgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
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| T |
21503517 |
gtgatgaaattgagaaaatgatgaattctttttggtgg |
21503554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 5085079 - 5085115
Alignment:
| Q |
39 |
tgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |
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| T |
5085079 |
tgatgaaatcgagaagatgatgaactctttttggtgg |
5085115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6956644 - 6956424
Alignment:
| Q |
1 |
ctattttatgagtattttccga-ttccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggagaaatggtggaaatagaaataag |
99 |
Q |
| |
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|||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
6956644 |
ctatttcatgagtatttttctaattccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggggaaatggtgaaaatagaaataag |
6956545 |
T |
|
| Q |
100 |
ggaatcaggtagctttcatgggacaagttatgtgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggca |
199 |
Q |
| |
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||||||||| |||||||||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6956544 |
agaatcaggtggctttcatgggataaattatatgtccataaaagaaatggtggtatgggttttaagaatttatatatgttcaatatggcacttctaggca |
6956445 |
T |
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| Q |
200 |
agcaagtctggcggttaatgt |
220 |
Q |
| |
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| ||||| || |||||||||| |
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| T |
6956444 |
aacaagtatgtcggttaatgt |
6956424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 13524703 - 13524666
Alignment:
| Q |
38 |
gtgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
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|
| T |
13524703 |
gtgatgaaattgagaaaatgatgaattcttttttgtgg |
13524666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 13614238 - 13614201
Alignment:
| Q |
38 |
gtgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
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| T |
13614238 |
gtgatgaaattgagaaaatgatgaattcttttttgtgg |
13614201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 21272905 - 21272707
Alignment:
| Q |
22 |
attccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtggagaaatggtggaaatagaaataagggaatcaggtagctttcatggg |
121 |
Q |
| |
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||||| |||||| |||| || ||||| |||||||| |||||||||||||||||| ||||||||||||||| || |||||||||| || ||| || |||| |
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| T |
21272905 |
attccatcatctattggagacgaaattgagaaaatcatgaattctttttggtgggaaaatggtggaaataggaacaagggaatcaagtggctatcgtggg |
21272806 |
T |
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| Q |
122 |
acaagttatgtgtccataaaagaagcggtggtatgggttttaagaatttatatatgttcaatatggcacttcttggcaagcaagtctggcggttaatgt |
220 |
Q |
| |
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| || ||| |||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
21272805 |
ataaactatccgtccataaaagagatggaggtatgagttagaagaatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgt |
21272707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 204739 - 204702
Alignment:
| Q |
38 |
gtgatgaaatcgagaaaatgatgaattctttttggtgg |
75 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
204739 |
gtgatgaaattgagaaaatgatgaattctttttggtgg |
204702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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