View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_high_2 (Length: 558)
Name: NF8536_high_2
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_high_2 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 9e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 241 - 492
Target Start/End: Original strand, 30470514 - 30470765
Alignment:
| Q |
241 |
agttcttctcatattataaataacttataatatggatcgcagcaactaatgcttcaattttatgttgtttttgtttttctttgcaggttgagcacaatta |
340 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
30470514 |
agttcttctcatattataaataacttataataaggattgcagcaactaatgcttcaattttatgctgtctttgtttttcttcgcaggttgagcacaatta |
30470613 |
T |
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| Q |
341 |
aggcattgca-ttttgaaaatcattatcattgttataccattattatctttgctaatatatgctcctaattgttcaagaattttatctatgctccattat |
439 |
Q |
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|||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||| || |
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| T |
30470614 |
aggcattgcatttttggagatcgttatcattgttataccattattatctttgctaatatatgctcctaattgtttaagaatttcatctctggtcca-tac |
30470712 |
T |
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| Q |
440 |
tgacagtttattactgatattaatggcaccaatctcaattgatactatatatc |
492 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
30470713 |
tgacggtttattactgatatcaatggcaccaatctcaattgatactatgtatc |
30470765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 16190281 - 16190333
Alignment:
| Q |
40 |
aatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaat |
92 |
Q |
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| T |
16190281 |
aatcgccgccgccggagatccagtctctttgatattaccaccgatacggtaat |
16190333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 44300693 - 44300928
Alignment:
| Q |
19 |
tttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaa--ttttcctgcaatctc--tatagaaa |
114 |
Q |
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| T |
44300693 |
tttctccgccgaagtaatctcaatcgccgtcgccgtagatccagtctctttgatatcaccaccgacacggtaaacttttccggcaatctctttatagaaa |
44300792 |
T |
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| Q |
115 |
ctgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtagta-----ttatggtattgcagaaatgagatttaattttctgtt |
209 |
Q |
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| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||| |||||||| || ||||||||||||||||| |
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| T |
44300793 |
cagtaaaaaactttttgcctaaatttgtattcaattacttactaatcaataaagtagtactgtcttatagtattgcaaaatagagatttaattttctgtc |
44300892 |
T |
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| Q |
210 |
atttattggttttctaattttgattcaagcaagttc |
245 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
44300893 |
atttattggttttctaattttgattcaatcaagttc |
44300928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 31232253 - 31232483
Alignment:
| Q |
19 |
tttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcctgcaatctct--atagaaac |
115 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| |||||||| |
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| T |
31232253 |
tttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcaccaccgacagggtaatttctccggcaatctctttatagaaac |
31232352 |
T |
|
| Q |
116 |
tgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtagtattatggtattgcagaaatgagatttaattt--tctgttattt |
213 |
Q |
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|||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| |
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| T |
31232353 |
agtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaatagagtagtattatgatattgcaaaactgagatttaattttctctgttattt |
31232452 |
T |
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| Q |
214 |
attggttttctaattttgattcaagcaagtt |
244 |
Q |
| |
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||||||||||||||||||||| || |||||| |
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| T |
31232453 |
attggttttctaattttgattgaatcaagtt |
31232483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 99963 - 100193
Alignment:
| Q |
19 |
tttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcctgcaatctct--atagaaac |
115 |
Q |
| |
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|||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| |||||||| |
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| T |
99963 |
tttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctatttgatatcaccaccgacagggtaatttctccggcaatctctttatagaaac |
100062 |
T |
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| Q |
116 |
tgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtagtattatggtattgcagaaatgagatttaattt--tctgttattt |
213 |
Q |
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|||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| |
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| T |
100063 |
agtaaaaaactttttgctcaaatgtgtattcaattagttactaatcaatagagtagtattatgatattgcaaaactgagatttaattttctctgttattt |
100162 |
T |
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| Q |
214 |
attggttttctaattttgattcaagcaagtt |
244 |
Q |
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||||||||||||||||||||| || |||||| |
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| T |
100163 |
attggttttctaattttgattgaatcaagtt |
100193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 38404373 - 38404603
Alignment:
| Q |
19 |
tttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcctgcaatctct--atagaaac |
115 |
Q |
| |
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|||||| |||||||||||| |||| || ||| || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||| |
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| T |
38404373 |
tttctctgccgaagtaatcgcaattgctgtcgccatagatccagtctctttgatatcaccaccgacagggtaatttctccggcaatctctttatagaaac |
38404472 |
T |
|
| Q |
116 |
tgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtagtattatggtattgcagaaatgagatttaattt--tctgttattt |
213 |
Q |
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|
|||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| |
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| T |
38404473 |
agtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaatagagtagtattatgatattgcaaaactgagatttaattttctctgttattt |
38404572 |
T |
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| Q |
214 |
attggttttctaattttgattcaagcaagtt |
244 |
Q |
| |
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||||||||||||||||||||| || |||||| |
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| T |
38404573 |
attggttttctaattttgattgaatcaagtt |
38404603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 36236223 - 36235992
Alignment:
| Q |
19 |
tttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcctgcaatctc--tatagaaac |
115 |
Q |
| |
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|||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||| |
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| T |
36236223 |
tttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcaccaccgacagggtaatttctccggcaatctcgttatagaaac |
36236124 |
T |
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| Q |
116 |
tgtaaaacactttttgcctaaatttgtattcaatt-agttacttatcaatagagtagtattatggtattgcagaaatgagatttaattt--tctgttatt |
212 |
Q |
| |
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|||||| ||||||| || |||| ||||||||||| ||||||| |||||||||||||||||||| ||||||| || ||||||||||||| ||||||||| |
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| T |
36236123 |
agtaaaaaacttttttcccaaatgtgtattcaattaagttactaatcaatagagtagtattatgatattgcaaaactgagatttaattttctctgttatt |
36236024 |
T |
|
| Q |
213 |
tattggttttctaattttgattcaagcaagtt |
244 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |
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| T |
36236023 |
tattggttttctaattttgattgaatcaagtt |
36235992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 33815090 - 33815131
Alignment:
| Q |
54 |
tagatccagtctctttgatatcaccaccgacacagtaatttt |
95 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
33815090 |
tagatccagtctctttgatatcaccactgacacaataatttt |
33815131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 33874560 - 33874601
Alignment:
| Q |
54 |
tagatccagtctctttgatatcaccaccgacacagtaatttt |
95 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
33874560 |
tagatccagtctctttgatatcaccactgacacaataatttt |
33874601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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