View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_high_7 (Length: 356)
Name: NF8536_high_7
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 31251970 - 31252297
Alignment:
| Q |
14 |
agaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttt-atgagttcaca |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31251970 |
agaaggttttgtcctaaatccttacatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcaca |
31252069 |
T |
|
| Q |
113 |
gaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaactacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31252070 |
gaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatat--tttttatcatctttctaaaactattacagaactacg |
31252167 |
T |
|
| Q |
213 |
agagaaagttcctttgatggttgaatcaatcaaaaataccaccattgtatgttatacaaatcttaagtaattaaatgtttacgtattaccnnnnnnntaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
31252168 |
agagaaagttcctttgatggttgaatcaatcaaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagc-aaaaaataa |
31252266 |
T |
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| Q |
313 |
ataactgttgacttcaattgtagaataattg |
343 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
31252267 |
ataacttttgacttcaattgtagaataattg |
31252297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 13003622 - 13003289
Alignment:
| Q |
8 |
aagcagagaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttt-atgag |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13003622 |
aagcaaagaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgag |
13003523 |
T |
|
| Q |
107 |
ttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacaga |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
13003522 |
ttcacagaatgtgacagcttcttcaaaaaatcattgtttatagtgggagagattggtggaaatgatat--tttttatcatctttctaaaactattaaaga |
13003425 |
T |
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| Q |
207 |
actacgagagaaagttcctttgatggttgaatcaatcaaaaataccaccattgtatgttatacaaatcttaagtaattaaatgtttacgtattaccnnnn |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13003424 |
actacgagagaaagttcctttgatggttgaatcaatcaaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagc-aaa |
13003326 |
T |
|
| Q |
307 |
nnntaaataactgttgacttcaattgtagaataattg |
343 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
13003325 |
aaataaataacttttgacttcaattgtagaataattg |
13003289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 31094413 - 31094134
Alignment:
| Q |
14 |
agaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttt----ttatgagttc |
109 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| || ||||||| |
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| T |
31094413 |
agaaggttttgtcctaactccttgcttgttatttttgtgtgatataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttc |
31094314 |
T |
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| Q |
110 |
acagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaact |
209 |
Q |
| |
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||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
31094313 |
acagaatgtgatagcttcttcaaaaaatcgttgtttatagtgggagagattggtggaaatgatat--tttttaccatcttttcaaaactattacagaact |
31094216 |
T |
|
| Q |
210 |
acgagagaaagttcctttgatggttgaatcaatcaaaaataccaccattgtatgttatacaaatcttaagtaattaaatgtt |
291 |
Q |
| |
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| T |
31094215 |
gcaagagatagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgtt |
31094134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 27206033 - 27206305
Alignment:
| Q |
14 |
agaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttt-ttatgagttcaca |
112 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||||| ||| |||||| |||| || | || |||||||||||||| |||||||| || |||||||||| |
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| T |
27206033 |
agaaggttttgtcctaactccctgcatactatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcaca |
27206132 |
T |
|
| Q |
113 |
gaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaactacg |
212 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||| | ||| | ||||||||||||||||||||||||| || |
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| T |
27206133 |
gaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggtagaaatgacgt--tttattcgatctttctaaaactattacagaactgcg |
27206230 |
T |
|
| Q |
213 |
agagaaagttcctttgatggttgaatcaa-tcaaaaataccaccattgtatgttatacaaatcttaagtaattaa |
286 |
Q |
| |
|
||||| ||||| ||||| ||||| |||| | ||||||||||||| |||||||||||| || ||||| |||||| |
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| T |
27206231 |
agagatggttcccttgatcgttgagtcaattaaaaaataccaccaatgtatgttataccaaatttaagcaattaa |
27206305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 294
Target Start/End: Original strand, 16162748 - 16162970
Alignment:
| Q |
72 |
tctatatgactaacaaaacttttgttttttat--gagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaat |
169 |
Q |
| |
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||||||||||||||||||||||| |||||| | || | ||||| ||||| |||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
16162748 |
tctatatgactaacaaaactttttttttttttttgaaataacagagtgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaat |
16162847 |
T |
|
| Q |
170 |
gatataatttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaatcaaaaataccaccattgtatgttata- |
268 |
Q |
| |
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||| | ||||| ||| |||||||||||||||||||||| ||||| | ||||| ||||| ||||||||||| | || ||||||| |||| |||||| |
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|
| T |
16162848 |
gatgt--ttttttacatatttctaaaactattacagaactgcgagaaattgttcccttgattgttgaatcaattacgaagaccaccaatgtaggttatat |
16162945 |
T |
|
| Q |
269 |
caaatcttaagtaattaaatgtttac |
294 |
Q |
| |
|
||||| |||||||||||||||||||| |
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| T |
16162946 |
caaat-ttaagtaattaaatgtttac |
16162970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25658207 - 25658257
Alignment:
| Q |
122 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
172 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25658207 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25658257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25664612 - 25664662
Alignment:
| Q |
122 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
172 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25664612 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25664662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25671017 - 25671067
Alignment:
| Q |
122 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
172 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25671017 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25671067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25677422 - 25677472
Alignment:
| Q |
122 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
172 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25677422 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25677472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25684096 - 25684146
Alignment:
| Q |
122 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
172 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25684096 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25684146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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