View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_low_3 (Length: 460)
Name: NF8536_low_3
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 35415426 - 35415846
Alignment:
| Q |
18 |
cattcaatcaaggagaattgaaatagatattaggcta-ccccaaaagacaagacatatctgagtaaaatcaaactatcttttgatgtatgatgtataaac |
116 |
Q |
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| T |
35415426 |
cattcaatcaaggagaattgaaatagatattagactatccccaaaagacaagacatatttgagtaaaat-------tcttttgatgtatgatgtataaac |
35415518 |
T |
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| Q |
117 |
caaccgtaaacacagatagattcacgaaccaagccc-taaaataaatcacacatgca---acaaccctttcgagcccttcgaaccacgcgcgaagcaaac |
212 |
Q |
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| T |
35415519 |
caaccatcaacacagatagattcacgaaccaagcccctaaaataaatcacacatgcattaacaaccctttcgagcccttcgaaccacgcgcgaagcaaac |
35415618 |
T |
|
| Q |
213 |
caggtatgagaaaacaaaaccaacacgacggcaacaaggttttgctgcagaaccatagaacaaacaatacccaacgaacccacctacaaatcagtgagtc |
312 |
Q |
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| T |
35415619 |
caggtatgagaaaagaaaaccaacacgacggcaacaaggttttgctgcagaaccatagaaca----------aacggacccacctacaaatcagtgagtc |
35415708 |
T |
|
| Q |
313 |
tgtttaagaaaacagacatactctcatgggttttagagaaaaccacaaacacgggaacaataccaaggcggtgttgctggtgatgaacgacccagacgac |
412 |
Q |
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| T |
35415709 |
tgtttaagaaaacagacatactctcatgggttttagagaaaaccacaaacacgggaacaataccaaggaggtgttgctggtgatgaacgatccagaagac |
35415808 |
T |
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| Q |
413 |
caccacaaaacccagatcaagcttcattgtggtctctg |
450 |
Q |
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| T |
35415809 |
caccacaaaacccagatcaagcttcattgtggtctctg |
35415846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 20114721 - 20114870
Alignment:
| Q |
83 |
aatcaaactatcttttgatgtatgatgtataaaccaaccgtaaacacagatagattcacgaaccaag-ccctaaaataaatcacacatgc---aacaacc |
178 |
Q |
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||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| || |||||||||| || |||| || |
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| T |
20114721 |
aatcaaattatcttttgatgtatggtgtataaaccaaccgtcaacatagatagattcacgaaccaagcccctgcaacaaatcacacaggcattaacagcc |
20114820 |
T |
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| Q |
179 |
ctttcgagcccttcgaaccacgcgcgaagcaaaccaggtatgagaaaaca |
228 |
Q |
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| T |
20114821 |
ctttcgagctcttcgaaccacacgcgaagcaaaccaggtctgagaaaaca |
20114870 |
T |
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