View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8536_low_4 (Length: 440)

Name: NF8536_low_4
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8536_low_4
NF8536_low_4
[»] chr2 (10 HSPs)
chr2 (14-421)||(45166090-45166493)
chr2 (37-87)||(18570979-18571029)
chr2 (37-87)||(31026702-31026752)
chr2 (41-89)||(22131254-22131302)
chr2 (36-89)||(4229408-4229461)
chr2 (52-89)||(14373427-14373464)
chr2 (42-87)||(45000848-45000893)
chr2 (37-81)||(12748691-12748735)
chr2 (51-87)||(37402086-37402122)
chr2 (36-88)||(44605140-44605192)
[»] chr7 (8 HSPs)
chr7 (37-87)||(2525846-2525896)
chr7 (37-89)||(36314627-36314679)
chr7 (37-85)||(38134410-38134458)
chr7 (37-87)||(20427637-20427687)
chr7 (38-87)||(24146824-24146873)
chr7 (27-86)||(16827639-16827696)
chr7 (38-94)||(17851439-17851495)
chr7 (37-81)||(44172898-44172942)
[»] chr4 (13 HSPs)
chr4 (37-87)||(56049884-56049933)
chr4 (37-89)||(18513241-18513293)
chr4 (36-87)||(25390888-25390939)
chr4 (37-84)||(14465299-14465346)
chr4 (51-90)||(40224497-40224536)
chr4 (41-87)||(3568852-3568898)
chr4 (39-89)||(11110212-11110262)
chr4 (227-288)||(4273786-4273847)
chr4 (38-87)||(33950144-33950193)
chr4 (37-90)||(43299970-43300023)
chr4 (37-90)||(43300623-43300676)
chr4 (37-81)||(5654599-5654643)
chr4 (37-85)||(24846782-24846830)
[»] chr3 (5 HSPs)
chr3 (263-348)||(49120978-49121063)
chr3 (37-87)||(20691326-20691376)
chr3 (37-87)||(40150573-40150623)
chr3 (41-90)||(23271993-23272042)
chr3 (51-87)||(27513664-27513700)
[»] chr1 (8 HSPs)
chr1 (37-87)||(19637775-19637825)
chr1 (38-87)||(31667433-31667482)
chr1 (27-66)||(1314203-1314242)
chr1 (38-89)||(30847720-30847771)
chr1 (227-288)||(2809884-2809945)
chr1 (27-90)||(11412767-11412827)
chr1 (38-90)||(1864879-1864931)
chr1 (38-98)||(38075961-38076021)
[»] chr5 (7 HSPs)
chr5 (37-89)||(14818303-14818354)
chr5 (36-87)||(17925174-17925225)
chr5 (37-88)||(19737483-19737534)
chr5 (119-147)||(36577616-36577644)
chr5 (37-89)||(38749563-38749615)
chr5 (27-87)||(40211953-40212013)
chr5 (41-89)||(43208274-43208322)
[»] chr6 (5 HSPs)
chr6 (40-87)||(9024178-9024225)
chr6 (38-87)||(9617442-9617491)
chr6 (39-87)||(9629392-9629440)
chr6 (41-85)||(10157995-10158039)
chr6 (51-87)||(32980979-32981015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (37-87)||(99900-99950)
[»] scaffold0011 (1 HSPs)
scaffold0011 (37-87)||(240023-240073)
[»] chr8 (6 HSPs)
chr8 (37-87)||(12985399-12985449)
chr8 (37-86)||(3508059-3508108)
chr8 (38-78)||(29198490-29198530)
chr8 (38-86)||(31236580-31236628)
chr8 (51-87)||(31548295-31548331)
chr8 (35-79)||(34201056-34201100)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Complemental strand, 45166493 - 45166090
Alignment:
Q  14 agatactatgcgcgacaccgataataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgggcatcgatatttgtccgatgctg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  45166493 agatactatgcgcgacaccgataataataattttagcaaatgacatagttcaatgtaaccatatgtgtcggtgttgggcatcgatatgtgtccgatgctg 45166394  T
Q  114 ggacaacgcctaatccaagaagtgtctgtgcttcattggctcaaatactaccatataaaacacnnnnnnnnnnnnnnaaatcattgaagattttctgagc 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||    
T  45166393 ggacaacgcctaatccaaggagtgtctgtgcttcattggctcaaatactaccatataaaacactttttttttt----aaatcattgaagattttctgagc 45166298  T
Q  214 cgattggttctgtaactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctgttataagtggcctgtaacttggttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45166297 cgattggttctgtaactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctgttataagtggcctataacttggttc 45166198  T
Q  314 agcttgcacacatagcacagccactgcagctacctgtagagtagaatgttgagatgaattaagaagtactagcatttaacactcagcattaaaacatgtg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166197 agcttgcacacatagcacagccactgcagctacctgtagagtagaatgttgagatgaattaagaagtactagcatttaacactcagcattaaaacatgtg 45166098  T
Q  414 attacagt 421  Q
    ||||||||    
T  45166097 attacagt 45166090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 18570979 - 18571029
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||||||| ||||||||||||||||||||| ||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 31026702 - 31026752
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||||||| |||||||||||||||| |||||||||    
T  31026702 ataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 22131302 - 22131254
Alignment:
Q  41 taattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||| || ||||||||| |||||||||||||| ||||||||||||||    
T  22131302 taatttgagaaaatgacattgttcaatgtaatcacatgtgtcggtgttg 22131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 4229461 - 4229408
Alignment:
Q  36 aataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    ||||||||||| ||  ||||||||| |||| ||||||||||||||||| |||||    
T  4229461 aataataatttaagagaatgacataattcagtgtaatcatatgtgtcgatgttg 4229408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 14373464 - 14373427
Alignment:
Q  52 aatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  14373464 aatgacataattcaatgtaatcacatgtgtcggtgttg 14373427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 45000893 - 45000848
Alignment:
Q  42 aattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||| || |||||||| | ||||||||||||||||||||||||||    
T  45000893 aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgt 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 12748691 - 12748735
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgt 81  Q
    |||||||||| || ||||||||||||||| |||||||||| ||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgt 12748735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 37402122 - 37402086
Alignment:
Q  51 aaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  37402122 aaatgacataattcaatgtaatcatatgtgtcagtgt 37402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 44605192 - 44605140
Alignment:
Q  36 aataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgtt 88  Q
    ||||||||||| || |||| ||||| ||||||||||| | |||||||||||||    
T  44605192 aataataatttgagaaaataacataattcaatgtaattacatgtgtcggtgtt 44605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 2525896 - 2525846
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  2525896 ataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgt 2525846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 36314679 - 36314627
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||||||| || |||||||||| |||||||||||||||||||| |||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttg 36314627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 38134458 - 38134410
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggt 85  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 20427687 - 20427637
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || | |||||||| || |||||||||||||||||||||||    
T  20427687 ataataatttgagaagatgacatatttaaatgtaatcatatgtgtcggtgt 20427637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 24146824 - 24146873
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||||| |||| ||||| |||||| |||| ||||||||||||||    
T  24146824 taataattttagaaaatcacataattcaatataattatatgtgtcggtgt 24146873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 16827639 - 16827696
Alignment:
Q  27 gacaccgataataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtg 86  Q
    |||||||||||  ||||||| ||||||||||||  ||||||||||||| |||||| ||||    
T  16827639 gacaccgataa--ataatttgagcaaatgacatgattcaatgtaatcacatgtgttggtg 16827696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 17851439 - 17851495
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgggcat 94  Q
    |||||||||||| |||| ||||| |||| |||||| ||||||||| ||||| |||||    
T  17851439 taataattttagaaaatcacataattcagtgtaattatatgtgtctgtgttaggcat 17851495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 44172942 - 44172898
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgt 81  Q
    |||||||||| || |||||||||| ||||||||||||| ||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 56049884 - 56049933
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  56049884 ataataatttgag-aaatgacatagttcaatgtaatcatatgtgtcggtgt 56049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 18513293 - 18513241
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||||||| || |||||||||| ||||||||||||||||||||| ||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttg 18513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 25390939 - 25390888
Alignment:
Q  36 aataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||||||| |||||||||| |||||| ||| |||||||||||||||    
T  25390939 aataataattttagaaaatgacataattcaatataaccatatgtgtcggtgt 25390888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 14465346 - 14465299
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcgg 84  Q
    |||||||||| || |||||||||| |||||| ||||||||||||||||    
T  14465346 ataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 40224536 - 40224497
Alignment:
Q  51 aaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  40224536 aaatgacataatttaatgtaatcatatgtgtcggtgttgg 40224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 3568898 - 3568852
Alignment:
Q  41 taattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||| || |||||||||||||||||  ||||||||||||||||||    
T  3568898 taatttgagaaaatgacatagttcaattaaatcatatgtgtcggtgt 3568852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 11110212 - 11110262
Alignment:
Q  39 aataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||||| || |||||||||| ||| |||||||||||||||||| |||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgtgtcgatgttg 11110262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 4273847 - 4273786
Alignment:
Q  227 aactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctg 288  Q
    |||||||||||  ||||||||||| |  ||||| | ||||||||| ||||||||||||||||    
T  4273847 aactctgagtgttcctccaagctcaacaggtacaagagggatgagggagtgtagaacatctg 4273786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 33950144 - 33950193
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||||| || |||| ||||| || |||||||||||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgt 33950193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 43300023 - 43299970
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    |||||||||| || |||| ||||| |||||||||||||||| || |||||||||    
T  43300023 ataataatttgagaaaattacataattcaatgtaatcatatctgccggtgttgg 43299970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 43300623 - 43300676
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    |||||||||| || |||| ||||| |||||||||||||||| ||||| ||||||    
T  43300623 ataataatttgagaaaattacataattcaatgtaatcatatttgtcgctgttgg 43300676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5654643 - 5654599
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgt 81  Q
    |||||||||| || |||||||||| ||||||||||||||| ||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 24846830 - 24846782
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggt 85  Q
    |||||||||| ||||||||||||| |||| |||| ||||||||| ||||    
T  24846830 ataataatttgagcaaatgacataattcactgtactcatatgtgacggt 24846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 49120978 - 49121063
Alignment:
Q  263 agggatgagagagtgtagaacatctgttataagtggcctgtaacttggttcagcttgcacacatagcacagccactgcagctacct 348  Q
    ||||| ||| ||||| ||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| || ||||| ||||    
T  49120978 agggacgagggagtgaagaacatctgtgattagtggccggtaacttggctctggttgcacacatagcacagctaccgcagcaacct 49121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 20691326 - 20691376
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||||||| |||| |||||||||||||||||||||    
T  20691326 ataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 40150623 - 40150573
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgt 40150573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 23272042 - 23271993
Alignment:
Q  41 taattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    |||||| || || ||||||| || ||||||||||||||||||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgttgg 23271993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 27513700 - 27513664
Alignment:
Q  51 aaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||  ||||||||||||||||||||||||||    
T  27513700 aaatgacattattcaatgtaatcatatgtgtcggtgt 27513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 19637775 - 19637825
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||||||||  ||||||||||||||||||||||||||    
T  19637775 ataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgt 19637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 31667433 - 31667482
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||||| |||||||||| || |||||||||| ||||||||||||    
T  31667433 taataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgt 31667482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 1314242 - 1314203
Alignment:
Q  27 gacaccgataataataattttagcaaatgacatagttcaa 66  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  1314242 gacaccgataataataatttaagtaaatgacatagttcaa 1314203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 30847771 - 30847720
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    ||||||||| |  |||||||||| ||||||||||||||||||||| ||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 2809945 - 2809884
Alignment:
Q  227 aactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctg 288  Q
    |||||||||||  ||||||||||| |  ||||| | ||||||||| ||||||||||||||||    
T  2809945 aactctgagtgttcctccaagctcaacaggtacaagagggatgagggagtgtagaacatctg 2809884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 11412827 - 11412767
Alignment:
Q  27 gacaccgataataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    ||||||||||||||||   | || |||||||||| |||||||| |||||| |||||||||||||    
T  11412827 gacaccgataataata---tgagaaaatgacataattcaatgtgatcataggtgtcggtgttgg 11412767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 1864931 - 1864879
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgg 90  Q
    ||||||||| || |||| ||||| |||| |||||| |||||||||||||||||    
T  1864931 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttgg 1864879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 38076021 - 38075961
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttgggcatcgat 98  Q
    ||||||||| || |||| |||||  ||| ||||||||||||||||||||| || |||||||    
T  38076021 taataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgtcggacatcgat 38075961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 14818354 - 14818303
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||||||| || |||||||||| |||||||||| |||||||||||||||||    
T  14818354 ataataatttgag-aaatgacataattcaatgtaaacatatgtgtcggtgttg 14818303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 17925225 - 17925174
Alignment:
Q  36 aataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||||||| || |||| ||||| ||||||||||| ||||||||||||||    
T  17925225 aataataatttaagaaaatcacataattcaatgtaataatatgtgtcggtgt 17925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 19737534 - 19737483
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgtt 88  Q
    |||||||||| || |||| ||||| ||||||| |||||||||||||||||||    
T  19737534 ataataatttgagaaaattacataattcaatgcaatcatatgtgtcggtgtt 19737483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 36577644 - 36577616
Alignment:
Q  119 acgcctaatccaagaagtgtctgtgcttc 147  Q
    |||||||||||||||||||||||||||||    
T  36577644 acgcctaatccaagaagtgtctgtgcttc 36577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 38749615 - 38749563
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||||||| |  |||||||||| ||||||||||| |||||||| |||||||    
T  38749615 ataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttg 38749563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 40211953 - 40212013
Alignment:
Q  27 gacaccgataataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||||| ||||||| || || |||| ||||| |||||| ||||||||||| |||||||    
T  40211953 gacaccgatgataataaattgagaaaattacataattcaatataatcatatgtatcggtgt 40212013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 43208322 - 43208274
Alignment:
Q  41 taattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgttg 89  Q
    |||||| || |||||||||| |||||||||||||||| |||| ||||||    
T  43208322 taatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttg 43208274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 9024225 - 9024178
Alignment:
Q  40 ataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||| || |||||||||| ||||||||||||||||||||| ||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 9024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 9617442 - 9617491
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||||| || |||| ||||| ||||||||||| ||||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 9629392 - 9629440
Alignment:
Q  39 aataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||| || |||| ||||| ||||||||||| ||||||||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  41 taattttagcaaatgacatagttcaatgtaatcatatgtgtcggt 85  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 32980979 - 32981015
Alignment:
Q  51 aaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| |||||| |||||||||||||||||||    
T  32980979 aaatgacataattcaatataatcatatgtgtcggtgt 32981015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 99900 - 99950
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    ||||||||||||| |||| ||||| ||||||||||| |||||||| |||||    
T  99900 ataataattttagaaaataacataattcaatgtaattatatgtgttggtgt 99950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 240073 - 240023
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||| | ||| ||||||||||||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgt 240023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 12985399 - 12985449
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 3508059 - 3508108
Alignment:
Q  37 ataataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtg 86  Q
    |||||||||| || |||| ||||| |||||||||||||||||||| ||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 29198530 - 29198490
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatg 78  Q
    ||||||||| || |||||||||| |||||||||||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatg 29198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  38 taataattttagcaaatgacatagttcaatgtaatcatatgtgtcggtg 86  Q
    ||||||||| || |||| ||||| ||||||||||| |||||||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 31548331 - 31548295
Alignment:
Q  51 aaatgacatagttcaatgtaatcatatgtgtcggtgt 87  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  31548331 aaatgacataattcaatgtaatcacatgtgtcggtgt 31548295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 34201100 - 34201056
Alignment:
Q  35 taataataattttagcaaatgacatagttcaatgtaatcatatgt 79  Q
    |||||||||||| || |||||||||| ||||||||||| ||||||    
T  34201100 taataataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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