View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_low_5 (Length: 436)
Name: NF8536_low_5
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 33401811 - 33401502
Alignment:
| Q |
1 |
gaggagtaaggcagatgagaatgatgtaggcaaatgctttcctgaagactatactgcaaatggttatcttccggttgttccttgcggccttgctgcatgg |
100 |
Q |
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| T |
33401811 |
gaggagtaaggcagatgagaatgatgtaggcaaatgctttcctgaagactatactgcaaatggttatcttccggttgttccttgtggccttgctgcttgg |
33401712 |
T |
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| Q |
101 |
agtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatggaaaagtgaccaaaaggccaaatttg |
200 |
Q |
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| T |
33401711 |
agtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatggaaaagtgaccaaaaggccaaatttg |
33401612 |
T |
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| Q |
201 |
ggtctgatgtttatcctaaaaattttcagactggcggtttaattnnnnnnnctagactttatgagagcatacctggaaggaaatatttatatatcttcgt |
300 |
Q |
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| T |
33401611 |
ggtctgatgtttatcctaaaaattttcagactggcagtttaattgggggtgctagacttaatgagagcatacctgtaagtaaatatttatatatctttgt |
33401512 |
T |
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| Q |
301 |
ccctatataa |
310 |
Q |
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| T |
33401511 |
cactatataa |
33401502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 43599410 - 43599575
Alignment:
| Q |
75 |
ttgttccttgcggccttgctgcatggagtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatg |
174 |
Q |
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|||||||||| ||||| |||||||||| | ||||||||||| |||| |||||||| | || ||||| || || ||||||||||| |||||||| |
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| T |
43599410 |
ttgttccttgtggcctcattgcatggagtatgttcaatgacacctacaaattttcaattgacaacaaggatttaactatcaacaaaaagaacatagcatg |
43599509 |
T |
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| Q |
175 |
gaaaagtgaccaaaaggccaaatttgggtctgatgtttatcctaaaaattttcagactggcggttt |
240 |
Q |
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| T |
43599510 |
gggaagtgacaaaaattctaaatttggtcatgaagtttatcctaaaaattttcagagtggaggttt |
43599575 |
T |
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