View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8536_low_6 (Length: 388)

Name: NF8536_low_6
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8536_low_6
NF8536_low_6
[»] chr2 (27 HSPs)
chr2 (23-382)||(10372283-10372642)
chr2 (93-368)||(10353548-10353832)
chr2 (132-374)||(10348212-10348454)
chr2 (136-272)||(10336367-10336503)
chr2 (134-274)||(9316558-9316698)
chr2 (121-364)||(9321407-9321659)
chr2 (127-270)||(8572958-8573101)
chr2 (87-274)||(9283603-9283790)
chr2 (132-274)||(9357710-9357852)
chr2 (202-274)||(9275051-9275123)
chr2 (132-359)||(9329035-9329271)
chr2 (132-240)||(7115110-7115218)
chr2 (302-364)||(9357614-9357676)
chr2 (205-273)||(12005658-12005726)
chr2 (123-274)||(9292458-9292609)
chr2 (301-364)||(10336275-10336338)
chr2 (308-364)||(9283833-9283889)
chr2 (302-364)||(9292359-9292421)
chr2 (204-260)||(8579032-8579088)
chr2 (28-76)||(9292638-9292686)
chr2 (27-74)||(9060488-9060535)
chr2 (205-252)||(11987021-11987068)
chr2 (207-250)||(16269456-16269499)
chr2 (32-77)||(9321697-9321745)
chr2 (205-274)||(9060666-9060735)
chr2 (302-359)||(9060772-9060829)
chr2 (306-359)||(9274948-9275001)
[»] chr8 (1 HSPs)
chr8 (136-273)||(41966185-41966322)
[»] chr4 (1 HSPs)
chr4 (114-368)||(26575300-26575563)
[»] chr3 (2 HSPs)
chr3 (120-261)||(37463041-37463182)
chr3 (300-364)||(37462929-37462993)
[»] scaffold0667 (1 HSPs)
scaffold0667 (132-357)||(4921-5149)
[»] chr1 (1 HSPs)
chr1 (303-364)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 382
Target Start/End: Complemental strand, 10372642 - 10372283
Alignment:
Q  23 atgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaacatcgaccctttcgaggttaacaacac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10372642 atgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaacattgaccctttcgaggttaacaacac 10372543  T
Q  123 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372542 catgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 10372443  T
Q  223 cctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcaaagcctccttatgtgttcatggcttcggtt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10372442 cctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcagagcctccttatgcgttcatggcttcggtt 10372343  T
Q  323 ttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaa 382  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  10372342 ttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaa 10372283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 93 - 368
Target Start/End: Complemental strand, 10353832 - 10353548
Alignment:
Q  93 caacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaaccct 192  Q
    ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | |||    
T  10353832 caacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcct 10353733  T
Q  193 tgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgacc 283  Q
       | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||   ||||      ||||     
T  10353732 aacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctgaca 10353633  T
Q  284 ccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttactt 368  Q
     | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  10353632 accctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaactt 10353548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 374
Target Start/End: Complemental strand, 10348454 - 10348212
Alignment:
Q  132 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 231  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  232 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgac-cccacaatcaaagcctccttatgtgttcatggcttcggttttgattct 330  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  331 ttatccggcgattacaaactcctcagaatatcttacttaatcga 374  Q
     ||||||| |||||||||||||||||||| ||| ||||| ||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcga 10348212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  136 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 235  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  236 aacatagggttatcccttttctccctcttcctattcc 272  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  134 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 233  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  234 taaacatagggttatcccttttctccctcttcctattccta 274  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 364
Target Start/End: Complemental strand, 9321659 - 9321407
Alignment:
Q  121 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 220  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  221 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 311  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  312 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  127 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 226  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  227 acacccgtaaacatagggttatcccttttctccctcttcctatt 270  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 274
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  87 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 186  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  187 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 274  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 132 - 274
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  132 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 231  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  232 cgtaaacatagggttatcccttttctccctcttcctattccta 274  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  202 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 274  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 359
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  132 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 231  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  232 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 322  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  323 ttgattctttatccggcgattacaaactcctcagaat 359  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  132 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 231  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  232 cgtaaacat 240  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  302 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  205 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 273  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  123 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 222  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  223 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 274  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  301 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  308 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  302 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  204 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 260  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 9292686 - 9292638
Alignment:
Q  28 gatgatgatgatttctctaaatcgaggattccactcaaccatcctttca 76  Q
    ||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  9292686 gatgatgatgatttctccaagtcgattattccactcaaccatcctttca 9292638  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 9060488 - 9060535
Alignment:
Q  27 cgatgatgatgatttctctaaatcgaggattccactcaaccatccttt 74  Q
    |||||||||||||||||||||||| | ||| || ||||||||||||||    
T  9060488 cgatgatgatgatttctctaaatcaatgataccgctcaaccatccttt 9060535  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  205 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 252  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  207 aatcacattctggaaccctaacacccgtaaacatagggttatcc 250  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 9321745 - 9321697
Alignment:
Q  32 atgatgatttctctaaatc---gaggattccactcaaccatcctttcac 77  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||    
T  9321745 atgatgatttctctaaatccatgatgattccactcaaccatcctttcac 9321697  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  205 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 274  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  302 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 359  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  306 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 359  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  136 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 235  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  236 aacatagggttatcccttttctccctcttcctattcct 273  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 368
Target Start/End: Complemental strand, 26575563 - 26575300
Alignment:
Q  114 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 213  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  214 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 303  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  304 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttactt 368  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttactt 26575300  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q  120 caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 219  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  37463182 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 37463083  T
Q  220 aaccctaacacccgtaaacatagggttatcccttttctccct 261  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  37463082 aaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  300 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

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Target: scaffold0667 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 357
Target Start/End: Complemental strand, 5149 - 4921
Alignment:
Q  132 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 231  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  232 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 327  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  328 tctttatccggcgattacaaactcctcaga 357  Q
     ||||| |||||||||||||| ||||||||    
T  4950 cctttaaccggcgattacaaaatcctcaga 4921  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  303 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 364  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

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