View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8536_low_9 (Length: 348)
Name: NF8536_low_9
Description: NF8536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8536_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 54861950 - 54862253
Alignment:
| Q |
18 |
tatatgatatgattgacagttgacagcgttgctcattttaatgatttatgtgaaatagactgcagagttttcctataaatttttctgctaaataaaagga |
117 |
Q |
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| T |
54861950 |
tatatgatatgattgatagttgacagcgttgctcattttaatgatttatgtgaaatagactgcagagttttcctataaatttttctgctaaataaaagga |
54862049 |
T |
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| Q |
118 |
agaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaagatgaaagtgatggtgtattagatatataatggatg |
217 |
Q |
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| T |
54862050 |
agaatcgatttattgatgtttatattttgtttggtattgtaggtggatactaaacgccgtcaaagatgaaagtgatggtgtattagatatataatggacg |
54862149 |
T |
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| Q |
218 |
ggaccctagtttttcaaatccttggtaggagcagaataaactcttgacaatggtctgaaagtttgtcaatggttggagtaatcatcactgtttccctagg |
317 |
Q |
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| T |
54862150 |
ggactctggtttttcaaatccttggtaggagcagaataaactc-tgacaatggtctgaaagtttgtcaatggttggagtaatcatcactgtttccctagg |
54862248 |
T |
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| Q |
318 |
tagtg |
322 |
Q |
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| T |
54862249 |
tagtg |
54862253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 54857160 - 54857199
Alignment:
| Q |
137 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
176 |
Q |
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| T |
54857160 |
ttatattttgtttggtattgtaggtggatactaaacgccg |
54857199 |
T |
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