View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_high_1 (Length: 568)
Name: NF8537_high_1
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_high_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 38486418 - 38485851
Alignment:
| Q |
1 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486418 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
38486319 |
T |
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| Q |
101 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486318 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccct |
38486219 |
T |
|
| Q |
201 |
ccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486218 |
ccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttga |
38486119 |
T |
|
| Q |
301 |
gttccatatatctgacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaa |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486118 |
gttccatatatctgacaagcgatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaa |
38486019 |
T |
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| Q |
401 |
atgatgacttttgcgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctag |
500 |
Q |
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| T |
38486018 |
atgatgacttttgcgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctag |
38485919 |
T |
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| Q |
501 |
aaaagccaaaagcttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggc |
568 |
Q |
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| T |
38485918 |
aaaagccaaaagcttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggc |
38485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
11 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
95 |
Q |
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| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 30120817 - 30120432
Alignment:
| Q |
1 |
aagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttca |
100 |
Q |
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|||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || |||| |
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| T |
30120817 |
aagtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttca |
30120718 |
T |
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| Q |
101 |
agggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccct |
200 |
Q |
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| T |
30120717 |
atggacccggcagtttgactctgtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaatactccttcccgt------ccct |
30120624 |
T |
|
| Q |
201 |
ccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttga |
300 |
Q |
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|| || |||||| ||||| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||| |
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| T |
30120623 |
tccagtagttctctcatccacatatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctga |
30120524 |
T |
|
| Q |
301 |
gttccatatatctgacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
389 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
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| T |
30120523 |
gttccataaatctgacaagcaaccacatatgtgaatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 568
Target Start/End: Complemental strand, 30120359 - 30120241
Alignment:
| Q |
450 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
549 |
Q |
| |
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|||||| || |||||||||||| || || | ||||||||||||||| ||||| | ||| | |||||||||| |||||| ||||||||||||||||| |
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| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
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| Q |
550 |
gtccgcgatagtgtctggc |
568 |
Q |
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|||||||||||||| |||| |
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| T |
30120259 |
gtccgcgatagtgtttggc |
30120241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
11 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
95 |
Q |
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|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
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| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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