View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_high_2 (Length: 473)
Name: NF8537_high_2
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 34764450 - 34763980
Alignment:
| Q |
1 |
gtatggaaacataatagtaatttattttgcattttgcattatgtgtacatcattgaagaattaaaaatattttaattgaagccatctttgtagttgtagg |
100 |
Q |
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| T |
34764450 |
gtatggaaacataatagt--tttattttgcattttgcattatgtgtacatcattgaagaaataaaaatattttcattgaagccatctttgtagttgtagg |
34764353 |
T |
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| Q |
101 |
ccccacaaagatagaagaaaattaggacctaaccctttaaacacgagtgagattgtaatgttatactgaatcaagagattattacctttataaaagggga |
200 |
Q |
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| T |
34764352 |
ccccgcaaagatagaagaaaattaggacctaaccctttaaacacgagtgagactttaatgttatactgaatcaagagattattacctttataaaagggga |
34764253 |
T |
|
| Q |
201 |
gtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataagaaccttgtttctattcttattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |
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| T |
34764252 |
gtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataataacattgtttctattcttagtat |
34764153 |
T |
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| Q |
301 |
cctta-------------------acaatacaccatgttggtggaaattgcaattgctttattggtgattgctctgtttatacacttacgtccaacacct |
381 |
Q |
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| T |
34764152 |
ccttaacaacttaagcaaatatatacaatacaccatgttggtggaaattgcaattgctttattggtgattgctctttttatacacttacgtccaacacct |
34764053 |
T |
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| Q |
382 |
actgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtc |
454 |
Q |
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| T |
34764052 |
actgcaaaatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtc |
34763980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 34779987 - 34780132
Alignment:
| Q |
309 |
atacaccatgttggtggaaattgcaattgctttattggtgattgctctgtttatacacttacgtccaacacctactgcaaaatcaaaggcacttcgccat |
408 |
Q |
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| T |
34779987 |
atacaccatgttggtggaacttgcagttactctattgctcattgctctcttcttacacttgcgtccaacacctactgcaaaatcaaaggctcttcgccac |
34780086 |
T |
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| Q |
409 |
cttccaaatccaccaagccctaaaccacgtcttccattcataggtc |
454 |
Q |
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| T |
34780087 |
cttccaaatccaccaagccctaaaccacgtcttccattcataggtc |
34780132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 306 - 454
Target Start/End: Complemental strand, 34756152 - 34756004
Alignment:
| Q |
306 |
acaatacaccatgttggtggaaattgcaattgctttattggtgattgctctgtttatacacttacgtccaacacctactgcaaaatcaaaggcacttcgc |
405 |
Q |
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| T |
34756152 |
acaatacaccatgttggtggaacttgcagttactctattgctcattgctctcttcttacacttgcgtccaacacctactgcaaaatcaaaggctcttcgc |
34756053 |
T |
|
| Q |
406 |
catcttccaaatccaccaagccctaaaccacgtcttccattcataggtc |
454 |
Q |
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| T |
34756052 |
caccttcccaatcctccgagtcccaaacctcgtcttccatccattggtc |
34756004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 34779841 - 34779959
Alignment:
| Q |
188 |
ttataaaaggggagtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacacctacctaagagtaaccaataagaaccttgttt |
287 |
Q |
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| T |
34779841 |
ttataaaagggaaatgtgggaaaccttttctctcagggcaaaacataaatcctatttgttctcaac----acctaagagtaactaataagaactttcttt |
34779936 |
T |
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| Q |
288 |
cta-ttcttattatccttaacaa |
309 |
Q |
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| T |
34779937 |
ctacttcttagtatacttaacaa |
34779959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 34756278 - 34756208
Alignment:
| Q |
188 |
ttataaaaggggagtgttggaaaccttttctctcagggcaaaacatcaaacctatttgttctcaacaccta |
258 |
Q |
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||||||||||| | ||| ||||||||||| |||| ||||||||| | ||||||||||||||||||||| |
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| T |
34756278 |
ttataaaagggaaatgtgggaaaccttttacttcagagcaaaacatacatcctatttgttctcaacaccta |
34756208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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