View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_high_3 (Length: 427)
Name: NF8537_high_3
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 6324283 - 6324520
Alignment:
| Q |
13 |
attattctcaacacaagaggatgagagtatatatgcggaggaaaatgcttgattagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggct |
112 |
Q |
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| T |
6324283 |
attattctcaacacaagaggatgagagtatatatgcggaggaaaatactt--ttagttgatgagaaaaatgcttggggtaggaaatgaaaatatgtggct |
6324380 |
T |
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| Q |
113 |
ggaaaatacaaatcaaggctggaatccatggctaaacacttcccattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaatta |
212 |
Q |
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| T |
6324381 |
ggaaaatacaaatcaaggctggaatccatggctaaacacttctcattttaagtgaagaagaaaatgcgtggaattgggttgaactgggaatacttaatta |
6324480 |
T |
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| Q |
213 |
cctgggaattcttaagtttgtgacgcaagaaatgcgtgac |
252 |
Q |
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| T |
6324481 |
cctgggaattcttaagtttgtgacgcaagaaatgcgtgac |
6324520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 6324590 - 6324677
Alignment:
| Q |
322 |
tagcatcacttataatcgaaatgaattagatacatcgtcaagatgtttatctattggtgcggcagttgtgttactaataggcaagttt |
409 |
Q |
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| T |
6324590 |
tagcatcacttataatcgaaatgaattagatacatcgtcaagatgtttatctattggtgcggcagttgtgttactaataggcaagttt |
6324677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 6332652 - 6332689
Alignment:
| Q |
322 |
tagcatcacttataatcgaaatgaattagatacatcgt |
359 |
Q |
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| T |
6332652 |
tagcattacttataatcgaaatgaattagatacatcgt |
6332689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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