View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_high_5 (Length: 391)
Name: NF8537_high_5
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 37073835 - 37074209
Alignment:
| Q |
1 |
atgaagatggtggggagagagaggtgtgaatttaaatgaatcaaggatgaaaatacactcatacgcggtgagtgatatccttcaatcgataatggcttta |
100 |
Q |
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| T |
37073835 |
atgaagatggtggggagagagaggtgtgaatttaaatgaatcaaggatgaaaatacactcatacgcggtgagtgatatccttcaatcgataatggcttta |
37073934 |
T |
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| Q |
101 |
gaaatattgattcattagaataacctacaactataacctatttttcttatgaaacaagctacgtaccctacccaaacaataagatctaaaatctaccaat |
200 |
Q |
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| T |
37073935 |
gaaatattgattcattagaataacctacaactataacctatttttcttatgaaacaagctacgtaccctacccaaacaataagatctaaaatctaccaat |
37074034 |
T |
|
| Q |
201 |
ttcacaaactgtttttatcatcaacataggaagatctcttttctatacactccaacaatttcctaagattctgattatctatcaagagaccatcatattc |
300 |
Q |
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| T |
37074035 |
ttcacaaactgtttttatcatcaacataggaagatctcttttctatacactccagcaatttcctaagattctgattatctatcaagagaccatcatattc |
37074134 |
T |
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| Q |
301 |
cataaggaacccttcagattgcttcttaaaagcttccacttcaatttccaaggacttaaccctgcttccttttac |
375 |
Q |
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| T |
37074135 |
cataaggaacccttcagattgcttcttaaaagcttccacttcaatttccaaggacttaaccctgcttccttttac |
37074209 |
T |
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 17429200 - 17429114
Alignment:
| Q |
265 |
aagattctgattatctatcaagagaccatcatattccataaggaacccttcagattgcttcttaaaagcttccacttcaatttccaa |
351 |
Q |
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| T |
17429200 |
aagattctgattgtcttccaagagacgatcatattccataaggaacccctcagattgctttttaagagcctctacttcagtttccaa |
17429114 |
T |
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