View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_high_7 (Length: 370)
Name: NF8537_high_7
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 8624168 - 8623851
Alignment:
| Q |
17 |
ttctctccaatcttgcactacttctccctgcatatgcaaatcaacaattagaatattactaataaacaacatttacnnnnnnnnnatgagtaatctataa |
116 |
Q |
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| T |
8624168 |
ttctctccaatcttgcactacttctccctgcatatgcaaatcaacaattagaatattactaataaacaacatttactttttttt-atgagtaatctatta |
8624070 |
T |
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| Q |
117 |
gtatctatagaagcattcttaaaatctttaggcatgttatgacaagtcctttaaaatatcactcacattaaaaaatttataagatcgtgcaacgaaaatt |
216 |
Q |
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| T |
8624069 |
gtatctatagaagcattcttaaaatctttaggcatgttatgacaagtcctt-aaaatataactcacattaaaaaatttataagatcgtgcaacgaaaatt |
8623971 |
T |
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| Q |
217 |
gttttagaagcattaaataaaaattctccacaatatttaggtttgtaatgcaactataatttgaaccttgttttaagaggatatattttccagataaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8623970 |
gttttagaagcattaaataaaaattctccacaatatttaggtttgtaatgcaactataattttaaccttgttttaagaggatatattttccagataaata |
8623871 |
T |
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| Q |
317 |
tatgtatgatagtaatggat |
336 |
Q |
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|||||||||||||||||||| |
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| T |
8623870 |
tatgtatgatagtaatggat |
8623851 |
T |
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