View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_low_14 (Length: 265)
Name: NF8537_low_14
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 38486407 - 38486654
Alignment:
| Q |
1 |
ggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaa |
100 |
Q |
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| T |
38486407 |
ggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaa |
38486506 |
T |
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| Q |
101 |
catatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttga |
200 |
Q |
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| T |
38486507 |
catatatttacaggtttcgtttcttctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttga |
38486606 |
T |
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| Q |
201 |
aaattcgaatgcattatggccatcctgatgtgtttgacaggttttggt |
248 |
Q |
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| T |
38486607 |
aaattcgaatgcattatggccatcctgatgtgtttgacaggttttggt |
38486654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 3685739 - 3685885
Alignment:
| Q |
102 |
atatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaa |
201 |
Q |
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| T |
3685739 |
atatattcacaggctctgtttcgtcgcttgcttggttcatgtcatcccaagagacaagttttgtgacactgggccagcgatttctggcaaaccctttgaa |
3685838 |
T |
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| Q |
202 |
aattcgaatgcattatggccatcctgatgtgtttgacaggttttggt |
248 |
Q |
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| T |
3685839 |
agtacggatgcactacggtcatccggatgtgtttgacagattttggt |
3685885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 30120879 - 30121053
Alignment:
| Q |
74 |
aaaccaactattttgggagtgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttag |
173 |
Q |
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|||||||| ||||| || || |||||||| || || || || | ||| ||||||||||| |||||||||||||| ||||| ||||||| |||||| ||| |
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| T |
30120879 |
aaaccaacaattttaggtgtcagggaacacattttcactggctccgtgtcctctcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctag |
30120978 |
T |
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| Q |
174 |
ggcagagggttttggcaaaccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggt |
248 |
Q |
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| T |
30120979 |
gacagagggttttggcaaatcctttgaaagttcgaatgcattatggtcatccagatgtgtttgacaggttttggt |
30121053 |
T |
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