View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_low_17 (Length: 252)
Name: NF8537_low_17
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30895504 - 30895268
Alignment:
| Q |
1 |
tcatttcaaccctattcatttctggcctatttaaaccctatcctgtttgtggaaaattgtgttaaggagcattgtttttgtgtatttcttctttcattga |
100 |
Q |
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| T |
30895504 |
tcatttcaaccctattcatttctggcctatttaaaccctatcctgtttgtggaaaattgt--taaggagcattgtttttgtgtatttcttctttcattga |
30895407 |
T |
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| Q |
101 |
atactgatgcaacttcatatggtgacactgctattttgaagtttaattcttacatagnnnnnnnaatttgaatccttagcaattatgctgccacaaaatg |
200 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
30895406 |
ataccgatgcaacttaatatggtgacactgctattttgaagtttaattcttacatagtttttttgatttgaatccttagcaattatgttgccacaaaatg |
30895307 |
T |
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| Q |
201 |
tgaactataaggcagaagctaatgttgctgttcacaggt |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
30895306 |
tgaactataaggcagaagctaatgttgctgttcagaggt |
30895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 30716853 - 30716941
Alignment:
| Q |
48 |
tgtggaaaattgtgttaaggagcattgtttttgtgtatttcttctttcattgaatactgatgcaacttcatatggtgacactgctatttt |
137 |
Q |
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||||||||||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
30716853 |
tgtggaaaattgtatttaggagtattgtttt-gtgtacttcttattatattgaatactgatgcaacttcatattgatacactgctatttt |
30716941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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