View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_low_23 (Length: 224)
Name: NF8537_low_23
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_low_23 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 43616726 - 43616653
Alignment:
| Q |
133 |
tttatatgaaaaattgatgaggaaagtgtaggtaatgtgatgatagatgagtaatggaaaatgagggtatttga |
206 |
Q |
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| T |
43616726 |
tttatatgaaaaattgatgaggaaagtgtaggtaatgtgatgatagatgagtgatggaaaatgagggtatttga |
43616653 |
T |
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Target: scaffold0016 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 38160 - 38228
Alignment:
| Q |
138 |
atgaaaaattgatgaggaaagtgtaggtaatgtgatgatagatgagtaatggaaaatgagggtatttga |
206 |
Q |
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| T |
38160 |
atgaaaaattgatgaggaaagtgtaagtaatgtgatgatagatgagtaatgaaacatgagggtatttga |
38228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 16204 - 16149
Alignment:
| Q |
138 |
atgaaaaattgatgaggaaagtgtaggtaatgtgatgatagatgagtaatggaaaa |
193 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
16204 |
atgaaaaattgatgagaaaagtgtaggtaatgtgatgatagatgagtgattgaaaa |
16149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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