View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8537_low_25 (Length: 208)

Name: NF8537_low_25
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8537_low_25
NF8537_low_25
[»] chr3 (15 HSPs)
chr3 (15-186)||(23401567-23401738)
chr3 (64-186)||(23469075-23469197)
chr3 (64-186)||(23454609-23454731)
chr3 (64-186)||(23440465-23440587)
chr3 (64-186)||(23472994-23473116)
chr3 (64-186)||(23479133-23479255)
chr3 (64-186)||(23352491-23352613)
chr3 (64-186)||(23447844-23447966)
chr3 (64-186)||(23499612-23499734)
chr3 (63-186)||(23398488-23398611)
chr3 (69-186)||(23463836-23463953)
chr3 (70-186)||(23386832-23386948)
chr3 (67-179)||(35768807-35768919)
chr3 (64-186)||(23405200-23405322)
chr3 (64-183)||(36003087-36003206)
[»] scaffold0201 (1 HSPs)
scaffold0201 (64-186)||(11995-12117)
[»] chr2 (2 HSPs)
chr2 (72-175)||(16122319-16122422)
chr2 (72-175)||(16336778-16336881)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 23401567 - 23401738
Alignment:
Q  15 gagatgaacagccatcaagtaagagtttccagagagattttgaatgaaattttggagctttttcaattcattttcgcatgcttccttgcttcttgaactc 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  23401567 gagatgaacagccatcaagtaagagtttccagagggattttgaatgaaattttggagctttttcaattcatttttgcatgcttcctagctccttgaactc 23401666  T
Q  115 ggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatct 186  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401667 ggattttcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatct 23401738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23469075 - 23469197
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  23469075 ttttggagcattttcaattcattgtcccatgcttccttgcttcttgaactcggatttgcacctaaaacttttatagccagaggattgcctttgcaatagg 23469174  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||| ||||||||||||    
T  23469175 caattacactctctgatagatct 23469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23454609 - 23454731
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||||||||||||||||||||||||| ||| | || |||| |||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  23454609 ttttggagctttttcaattcattttcccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcctttgcaatagg 23454708  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||| ||||||||||||    
T  23454709 caattacactctctgatagatct 23454731  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23440465 - 23440587
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23440465 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagattttcccctaaaacttttaaagccagaggattgcctttgcaatagg 23440564  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||||||||||||||||    
T  23440565 caattacactttctgatagatct 23440587  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23472994 - 23473116
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23472994 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagatttacccctaaaacttttaaagccagaggattgcctttgcaatagg 23473093  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||||||||||||||||    
T  23473094 caattacactttctgatagatct 23473116  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23479133 - 23479255
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||||||||||||||||||||||||| || ||||| | ||  ||||||||  |||| ||||||||||||||||  |||||| | || |||||||||||||    
T  23479133 ttttggagctttttcaattcattttcccacgcttcttggccccttgaactgagatttgcacctaaaacttttaatgccagagggttacctttgcaatagg 23479232  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||||||||||||||||    
T  23479233 caattacactttctgatagatct 23479255  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23352491 - 23352613
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    ||||| |||||||||||||||||||  ||| |||  || | |||||||||| |||| |||||||||||||||| ||||||  ||||||||| ||||||||    
T  23352491 ttttgtagctttttcaattcatttttccattcttttttccctcttgaactcagattagcacctaaaacttttaaagccagcggattgccttggcaatagg 23352590  T
Q  164 caattacactttctgatagatct 186  Q
    ||||||||| |||||||||||||    
T  23352591 caattacacgttctgatagatct 23352613  T

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Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23447844 - 23447966
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23447844 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23447943  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||| ||||||||||||    
T  23447944 caattacactatctgatagatct 23447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23499612 - 23499734
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23499612 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23499711  T
Q  164 caattacactttctgatagatct 186  Q
    |||||||||| ||||||| ||||    
T  23499712 caattacactatctgatacatct 23499734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 23398488 - 23398611
Alignment:
Q  63 attttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatag 162  Q
    |||||||||||||| |||||| ||||| |||| ||| ||||  |||||||| ||||| ||| |||||||||||| ||||||| | || | ||| ||||||    
T  23398488 attttggagcttttccaattctttttcccatgtttctttgccccttgaacttggatttgcagctaaaacttttaaagccagagggtttcatttacaatag 23398587  T
Q  163 gcaattacactttctgatagatct 186  Q
    ||||||| ||||| ||||||||||    
T  23398588 gcaattagactttgtgatagatct 23398611  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 23463836 - 23463953
Alignment:
Q  69 gagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatt 168  Q
    ||||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| ||||||||||||||    
T  23463836 gagctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatt 23463935  T
Q  169 acactttctgatagatct 186  Q
    |||||||| |||||||||    
T  23463936 acactttccgatagatct 23463953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 23386832 - 23386948
Alignment:
Q  70 agctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatta 169  Q
    |||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||||||||    
T  23386832 agctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatta 23386931  T
Q  170 cactttctgatagatct 186  Q
    |||||||||||| ||||    
T  23386932 cactttctgatatatct 23386948  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 35768919 - 35768807
Alignment:
Q  67 tggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaa 166  Q
    ||||| |||| |||||||||||  |||||||| || ||||||||||   ||   ||||| |||||||||| ||||| | |||||||||||||||||||||    
T  35768919 tggagtttttccaattcatttttccatgcttctttacttcttgaacgaagacgtgcacccaaaacttttaaagccaaaggattgcctttgcaataggcaa 35768820  T
Q  167 ttacactttctga 179  Q
    | |||||||||||    
T  35768819 taacactttctga 35768807  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 23405200 - 23405322
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||| ||||||||||||||||| ||| ||| ||   |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||    
T  23405200 ttttcgagctttttcaattcatcttcccatactattttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaatagg 23405299  T
Q  164 caattacactttctgatagatct 186  Q
    ||||||||||||| |||||||||    
T  23405300 caattacactttcagatagatct 23405322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 36003087 - 36003206
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||| |||||||| ||||||| |||| |||||||| |||||| ||| ||    ||| |||||||||||||||| ||||||  ||||||||  |||||||     
T  36003087 tttttgagcttttccaattcactttcccatgcttctttgctttttgtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagc 36003186  T
Q  164 caattacactttctgataga 183  Q
    ||||| | |||| |||||||    
T  36003187 caattgctctttttgataga 36003206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 11995 - 12117
Alignment:
Q  64 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 163  Q
    |||| ||||||||||||||||||||| ||||| || |||| ||||||||   |||| || |||| |||||||| ||| ||| ||||||||||||||||||    
T  11995 tttttgagctttttcaattcattttcccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaatagg 12094  T
Q  164 caattacactttctgatagatct 186  Q
     ||||||||||||||||||||||    
T  12095 aaattacactttctgatagatct 12117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 16122319 - 16122422
Alignment:
Q  72 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 171  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||   ||||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16122319 cttttccaattcactttcccatgcttctttgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16122418  T
Q  172 cttt 175  Q
    ||||    
T  16122419 cttt 16122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 16336881 - 16336778
Alignment:
Q  72 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 171  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||    |||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16336881 cttttccaattcactttcacatgcttctttgctttttgcacgaaaattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16336782  T
Q  172 cttt 175  Q
    ||||    
T  16336781 cttt 16336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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