View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8537_low_26 (Length: 207)

Name: NF8537_low_26
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8537_low_26
NF8537_low_26
[»] chr3 (18 HSPs)
chr3 (1-195)||(2748459-2748653)
chr3 (1-191)||(2856293-2856483)
chr3 (1-188)||(2839083-2839270)
chr3 (1-191)||(2768536-2768724)
chr3 (1-190)||(2789824-2790013)
chr3 (1-185)||(2806732-2806916)
chr3 (6-178)||(2818035-2818207)
chr3 (8-191)||(2796826-2797009)
chr3 (6-191)||(5412374-5412557)
chr3 (3-179)||(2758691-2758867)
chr3 (7-77)||(3200526-3200596)
chr3 (7-77)||(3357852-3357922)
chr3 (25-76)||(3311128-3311179)
chr3 (25-76)||(3322727-3322778)
chr3 (15-70)||(22104280-22104335)
chr3 (16-73)||(3304440-3304497)
chr3 (15-91)||(22621774-22621850)
chr3 (30-82)||(30990147-30990199)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-173)||(6635-6807)
[»] chr1 (2 HSPs)
chr1 (1-96)||(34975042-34975137)
chr1 (7-73)||(41947701-41947767)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2748653 - 2748459
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748653 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 2748554  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatttcta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748553 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatttcta 2748459  T

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Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2856293 - 2856483
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2856293 tgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacctct 2856392  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 191  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||    
T  2856393 caaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaatactgcagtttctgccatttaactctcatatcatatt 2856483  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 2839083 - 2839270
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  2839083 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatctcaagttcatctttgatatctgaaaaatctctgtgtacacctct 2839182  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcat 188  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||| ||||| |||||||||| |||||||||| |||||||| ||||    
T  2839183 cagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaatactgcagtctctgccatttaactctcatatcat 2839270  T

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Target: chr3; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 2768724 - 2768536
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  2768724 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacaccact 2768625  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 191  Q
    ||| ||||||||||||||||||||||| ||||| |||| ||| ||  ||||  |||| |||||||||||||||| |  |||||||||||||    
T  2768624 cagcagatttgtttcttcttttaggaattggaaaacttgcccaagagcaaataatacagcagtttctgccatttta--ctcatctcatatt 2768536  T

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Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2790013 - 2789824
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||  ||    
T  2790013 tgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctaaaaaatctttgtgcacaccact 2789914  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatat 190  Q
    ||| ||||||||||||||||||||||| |  ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  2789913 caggagatttgtttcttcttttaggaattccaacacttcccccaggacaaataatactgcagtttctgccatttcagtctcatctcatat 2789824  T

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Target: chr3; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 2806916 - 2806732
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |    
T  2806916 tgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgtgtgtacaccttt 2806817  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatct 185  Q
     ||||||||||||||||||||||||||  ||||||||||  | ||| ||||  ||||||||||||||||||||||||||||||||    
T  2806816 tagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatactgcagtttctgccatttcactctcatct 2806732  T

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Target: chr3; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 2818207 - 2818035
Alignment:
Q  6 gcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaa 105  Q
    |||||||| || |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  2818207 gcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttctagttcatctttgatgtctgaaaaatctctgtgtacacctctcagaa 2818108  T
Q  106 gatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcact 178  Q
    | ||||||||||||||||||||||| |||||||||  || | |  | ||||||||||||||||||||||||||    
T  2818107 gctttgtttcttcttttaggaactgaaacacttccgacaaggctgatgatactgcagtttctgccatttcact 2818035  T

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Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 2797009 - 2796826
Alignment:
Q  8 ttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaaga 107  Q
    |||||| ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||||| |||    
T  2797009 ttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcaga 2796910  T
Q  108 tttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 191  Q
    |||||||||||||||||||| |  ||||||| ||||||| ||||  |||||| |||||||||||||||||||||||||||||||    
T  2796909 tttgtttcttcttttaggaattcaaacactttccccagggcaaataatactgaagtttctgccatttcactctcatctcatatt 2796826  T

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Target: chr3; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 5412557 - 5412374
Alignment:
Q  6 gcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaa 105  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||  |||||||| || | ||||      
T  5412557 gcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctttgatgtctgaaaaa--tctgtgtatacctttcagcc 5412460  T
Q  106 gatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 191  Q
    ||||||||||||||| |||||| ||||||| || ||| ||| ||||| ||||||||||||||||||||| ||||| | ||||||||    
T  5412459 gatttgtttcttcttctaggaattggaacagtttcccaagggcaaacaatactgcagtttctgccatttaactcttagctcatatt 5412374  T

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Target: chr3; HSP #10
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 2758867 - 2758691
Alignment:
Q  3 tctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctca 102  Q
    ||||||||||| || |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||| ||| |    
T  2758867 tctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctctta 2758768  T
Q  103 gaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactc 179  Q
    |||||||||||| | | || || |  ||||||||||| |||| | |  |   |||||||||||||||||||||||||    
T  2758767 gaagatttgtttttaccttaagaagttggaacacttctcccaaggctgatattactgcagtttctgccatttcactc 2758691  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 3200596 - 3200526
Alignment:
Q  7 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 77  Q
    ||||||| |||||| || |||||||||| |||||  | |||||||||||||||||||||| ||||||||||    
T  3200596 cttcatcagcagcctttgtgtctgcatccttgagtgaaacttgaatgctctcaagttcatatttgatgtct 3200526  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 3357852 - 3357922
Alignment:
Q  7 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 77  Q
    ||||||| ||||||||| |||||||||| |||||  ||| ||| ||| |||||||||||||||||||||||    
T  3357852 cttcatcagcagcccttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 3357922  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 3311128 - 3311179
Alignment:
Q  25 tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 76  Q
    |||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3311128 tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3311179  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 3322727 - 3322778
Alignment:
Q  25 tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 76  Q
    |||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3322727 tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3322778  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 22104335 - 22104280
Alignment:
Q  15 gcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatcttt 70  Q
    ||||| ||||| || ||||||||||||||| |||| ||||| ||||||||||||||    
T  22104335 gcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt 22104280  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 3304440 - 3304497
Alignment:
Q  16 cagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat 73  Q
    ||||| ||||||| ||||| |||||||||  ||| ||||||||||| |||||||||||    
T  3304440 cagcctttctgtcagcatccttgaggaaggattggatgctctcaagatcatctttgat 3304497  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 22621774 - 22621850
Alignment:
Q  15 gcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtg 91  Q
    ||||| ||||| || ||||| || |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| ||||    
T  22621774 gcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctgcaaattctttgtg 22621850  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 30990147 - 30990199
Alignment:
Q  30 gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaa 82  Q
    |||||||| || ||| |||||||||| |||||||||||||| || ||||||||    
T  30990147 gcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaa 30990199  T

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Target: scaffold0691 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6635 - 6807
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 100  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||    
T  6635 tgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctgtaaaatctgtgtgtacacctct 6734  T
Q  101 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatt 173  Q
    ||||||||||||||||| ||||||||| ||||||| ||| || ||| ||||| ||||||||||||||||||||    
T  6735 cagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt 6807  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34975137 - 34975042
Alignment:
Q  1 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacac 96  Q
    ||||| ||||| | ||||| ||||| || | ||||||||||||| |||||||||| || ||||||| ||| ||||||| ||| ||| |||| ||||    
T  34975137 tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacac 34975042  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 41947701 - 41947767
Alignment:
Q  7 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat 73  Q
    |||||||  |||||||| |||||||||| ||||| ||| |||  |||||||||||||||| ||||||    
T  41947701 cttcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgat 41947767  T

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