View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8537_low_3 (Length: 428)
Name: NF8537_low_3
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_low_3 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 28608125 - 28607729
Alignment:
| Q |
20 |
attaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608125 |
attaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaa |
28608026 |
T |
|
| Q |
120 |
tctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttccaataaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28608025 |
tctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccactgccaataaa |
28607926 |
T |
|
| Q |
220 |
gtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28607925 |
gtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtatacaaatgca |
28607826 |
T |
|
| Q |
320 |
ccaacaacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607825 |
ccaacaacgtcatgtgtaccaagaatatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
28607729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 416
Target Start/End: Original strand, 7589668 - 7589852
Alignment:
| Q |
231 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc |
330 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||||||| ||| | | |||||||||| || |
|
|
| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt |
7589766 |
T |
|
| Q |
331 |
atgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
416 |
Q |
| |
|
| |||| || ||||||| |||||||| ||| | ||||| |||||| |||||||||| |||||||| ||| ||||| ||||| |
|
|
| T |
7589767 |
aggtgtgccgagaatatatgttatgtgggagcgataaaaaattcccatgaccacaaagagatattggttatcattccattaatctc |
7589852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 7589468 - 7589567
Alignment:
| Q |
30 |
cgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaac |
129 |
Q |
| |
|
||||||| || ||||| ||||||||| ||||||||||||||||| || ||| | |||||| |||||| ||| |||||||||| ||||||||||| |||| |
|
|
| T |
7589468 |
cgacacctttagtattaagaagcaagtctaaagcaaaaccatct-gaacacgtacgccaaaaaagaaactggcaaacaaagtgtttagaatcttttgaac |
7589566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 25 - 416
Target Start/End: Original strand, 438783 - 439174
Alignment:
| Q |
25 |
tgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatcttt |
124 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
438783 |
tgcaacgacacccttggtattgagaagcaagcctagagcaaaaccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatcttt |
438882 |
T |
|
| Q |
125 |
agaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttccaataaagtaaa |
224 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||| ||| |||| ||| |||||| || | ||||||||| ||||| | ||| |||||| | |
|
|
| T |
438883 |
ggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtaga |
438982 |
T |
|
| Q |
225 |
ttggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaac |
324 |
Q |
| |
|
| ||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||| |
|
|
| T |
438983 |
tcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaac |
439082 |
T |
|
| Q |
325 |
aacgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
416 |
Q |
| |
|
||| |||||||| |||||| |||| | |||| |||||||||| | ||| ||||| | ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
439083 |
aacatcatgtgtgccaagagtatcggctatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattcatctc |
439174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 227 - 416
Target Start/End: Complemental strand, 13659293 - 13659104
Alignment:
| Q |
227 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
326 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
|
| Q |
327 |
cgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
416 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||| |
|
|
| T |
13659193 |
tgtcttgtgttccaagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 416
Target Start/End: Complemental strand, 13651801 - 13651618
Alignment:
| Q |
233 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat |
332 |
Q |
| |
|
|||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || |||| || | |
|
|
| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt |
13651702 |
T |
|
| Q |
333 |
gtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
416 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| ||||||| | ||||||| | ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
13651701 |
gtgtgccaagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 13652011 - 13651869
Alignment:
| Q |
23 |
aatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatct |
122 |
Q |
| |
|
||||||| | ||||||| |||||||||| || ||||| |||||||| ||| |||||||||||||||| || ||||||| |||||||||||||| ||||| |
|
|
| T |
13652011 |
aatgcaagggcacccttagtattgagaatcatgcctagagcaaaactgtcttgagtacgcatgccaaaaaataaagtggtaaacaaagtgcttaaaatct |
13651912 |
T |
|
| Q |
123 |
ttagaacacacatcaagagtataatgataagtgtaaagggcca |
165 |
Q |
| |
|
|| ||||||| | ||||| ||||| | |||||| |||||||| |
|
|
| T |
13651911 |
ttggaacacataacaagattataagcacaagtgttaagggcca |
13651869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 13659487 - 13659349
Alignment:
| Q |
33 |
caccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacaca |
132 |
Q |
| |
|
|||||||||||||||||| || ||| | ||| |||| ||| |||||||||| ||||| |||||||| | |||||||||||||| |||||| ||||||| |
|
|
| T |
13659487 |
caccctttgtattgagaatcatgccgagagctaaactgtcttgagtacgcataccaaaaaagaaagtagcaaacaaagtgcttaaaatcttcggaacaca |
13659388 |
T |
|
| Q |
133 |
catcaagagtataatgataagtgtaaagggccaacttgg |
171 |
Q |
| |
|
| ||||| |||||| | |||||| ||||||||| |||| |
|
|
| T |
13659387 |
taacaagattataataacaagtgttaagggccaagttgg |
13659349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University