View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8537_low_5 (Length: 418)
Name: NF8537_low_5
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8537_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 368
Target Start/End: Complemental strand, 47996659 - 47996316
Alignment:
| Q |
28 |
tagataaatagcaacgctcctcaataaatttaacacttcacccgaaaagtaaaataaannnnnnnnnnnnaagattaaaagtaaaacaaatcacttttat |
127 |
Q |
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| T |
47996659 |
tagataaatagcaatgcttctcgataaatttaacacttcacccgaaaagtaaaataaattttttctttttaagattaaaagtaaaacaaatcacttttat |
47996560 |
T |
|
| Q |
128 |
gataggatagaaaagtaaaacaaatcttaacacatatcaagatccacatacgtacccacaatcacattatcgctaataaatctttctttgaagccttaat |
227 |
Q |
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| T |
47996559 |
gataggatagaaaagtaaaacaaatcttaacacataacaagatccacatacatacccacaatcacattatcgctaataaatctttctttgaagccttaat |
47996460 |
T |
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| Q |
228 |
agtcatgaaattgcagattgcaaaactaaatacagggtagtatactttagggaaagcaaaggttgaattattaatctagagt---ctacactcttgatct |
324 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47996459 |
agtcatgaaattgcagattgcaaaattaaatacagggtagtatactttagggaaagcaaaggttgaattattaatctagagtctactacactcttgatct |
47996360 |
T |
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| Q |
325 |
tgataatcgctcaaattattctagcacgtgcatgctcactcacc |
368 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
47996359 |
tgataatcgctcaaattattccagcaagtgcatgctcactcacc |
47996316 |
T |
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