View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8537_low_9 (Length: 360)

Name: NF8537_low_9
Description: NF8537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8537_low_9
NF8537_low_9
[»] chr5 (1 HSPs)
chr5 (1-360)||(2264791-2265130)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 2265130 - 2264791
Alignment:
Q  1 gattctggattatgagacacactgatgctttttctgccaaaagaaagaagtgaacataaagcaaattaaattaagactctttattttgtttgttcaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265130 gattctggattatgagacacactgatgctttttctgccaaaagaaagaagtgaacataaagcaaattaaattaagactctttattttgtttgttcaatta 2265031  T
Q  101 tatctctctcctaggcataattattctagcatataaactttgttttggattttaaagaattatttgtattgcttctcgttgaaggtttgacacttccatt 200  Q
    |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||    
T  2265030 tatctctctcctaggcataattattctagcatataaa-------------------gaattatttgtattgcttctcgttgaaggtttgacacttccatt 2264950  T
Q  201 ccatgtctcaagcaaagctttatatgaaaacagattttgtattttgcatagtttaagttaatttaattaattagtttgactgtttgattttcctttagtt 300  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264949 ccatgtctcaagcaa-gctttatatgaaaggagattttgtattttgcatagtttaagttaatttaattaattagtttgactgtttgattttcctttagtt 2264851  T
Q  301 atctggtattacaaagaaagatacaacaatttgactctgcactaataatattctattgat 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264850 atctggtattacaaagaaagatacaacaatttgactctgcactaataatattctattgat 2264791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University