View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_high_4 (Length: 456)
Name: NF8538_high_4
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 6277621 - 6277195
Alignment:
| Q |
20 |
ctacaaagctttaccacaaaatgggaaggtaattgttgtggagcttataatgcctgaagaaattcaaacaacagaaaaagataaattggttactggctat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6277621 |
ctacaaagctttaccacaaaatgggaaggtaattgttgtggagcttataatgcctgaagaaattcaaacaacagaaaaagataaattggttactggttat |
6277522 |
T |
|
| Q |
120 |
gacaatcttatgtttatgggtggtgggagtgaaagaacaaagaaagaatttgagagtttgtgcaaaagctctggattttctagttttgaaattgtttgct |
219 |
Q |
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| T |
6277521 |
gacaatcttatgtttatgggtggtgggagtgaaagaacaaagaaagaatttgagagtttgtgcaaaagctctggattttctagttttgaaattgtttgct |
6277422 |
T |
|
| Q |
220 |
tggctttttcttctttgggagtgatggaatttcttaaatgaaaaataatatatgtttagtacaataatccatatattttattattagtacaataatttat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6277421 |
tggctttttcttctttgggagtgatggaatttcttaaatgaaaaataatatatgtttagtacaataatccatatattttattattagtacaataatttat |
6277322 |
T |
|
| Q |
320 |
gtatgagcataatnnnnnnnngtcaatccattctacccagaaaaattgatacatatcatacatgaggatgttagctcaattgatatagacattgtaattt |
419 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
6277321 |
gtatgagcataataaaaaaaagtcaatccattctacccagaaaaattgatacatatcatacatgagaatgttagctcaattgatatagatattgtaattt |
6277222 |
T |
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| Q |
420 |
atgaagaggttgagatccgaatctctg |
446 |
Q |
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| T |
6277221 |
atacagaggttgaggttcgaatttctg |
6277195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 6281976 - 6281745
Alignment:
| Q |
20 |
ctacaaagctttaccacaaaatgggaaggtaattgttgtggagcttataatgcctgaagaaattcaaacaacagaaaaagataaattggttactggctat |
119 |
Q |
| |
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|||||||||||| |||||| ||||||| || ||||||||||| | || |||||| |||||||||| ||| || |||||| || | ||| ||| | |
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| T |
6281976 |
ctacaaagctttgccacaacatgggaaagtgattgttgtggacttcattatgcctcaagaaattcagcatacaaaagcagataagatgataactagcttt |
6281877 |
T |
|
| Q |
120 |
gacaatcttatgtttatgggtggtgggagtgaaagaacaaagaaagaatttgagagtttgtgcaaaagctctggattttctagttttgaaattgtttgct |
219 |
Q |
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||||| || ||||| ||| | |||| |||||||||| ||||||||||||| | || |||||| | |||||||||||||||||||| ||||||| |
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| T |
6281876 |
gacaacctcatgttcttggatagtggtgttgaaagaacagagaaagaatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtc |
6281777 |
T |
|
| Q |
220 |
tggctttttcttctttgggagtgatggaattt |
251 |
Q |
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| || |||||| | | ||||||||||||||| |
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| T |
6281776 |
ttgccttttctgccctaggagtgatggaattt |
6281745 |
T |
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