View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_1 (Length: 700)
Name: NF8538_low_1
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 158 - 684
Target Start/End: Complemental strand, 41698067 - 41697541
Alignment:
| Q |
158 |
gtgagcagattttacttattaatttcaagaaggaaattcttgcatttgttccgaaagaaggattgaaaagtttagaagatgattcctcaaacgagtgttc |
257 |
Q |
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| T |
41698067 |
gtgagcagattttacttattaatttcaagaaggaaattcttgcatttgttccgaaagaaggattgaaaagtttagaagatgattcctcaaatgagtgttc |
41697968 |
T |
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| Q |
258 |
tacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattc |
357 |
Q |
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| T |
41697967 |
tacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattc |
41697868 |
T |
|
| Q |
358 |
atattttgttctcgaattcaaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaagattgccaaa |
457 |
Q |
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| T |
41697867 |
atattttgttctcgaattcaaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaatattgccaaa |
41697768 |
T |
|
| Q |
458 |
tgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaa |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697767 |
tgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaa |
41697668 |
T |
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| Q |
558 |
tgatctcttaatattaaagtaagtattaagaacaaaattttctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgt |
657 |
Q |
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| T |
41697667 |
tgatctcttaatattaaagtaagtattaagaacaaaatttgctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgt |
41697568 |
T |
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| Q |
658 |
agctggtgggattgggcgcaacttcat |
684 |
Q |
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| T |
41697567 |
agctggtgggattgggcgcaacttcat |
41697541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 41698213 - 41698097
Alignment:
| Q |
19 |
atgaactctcggggactgcagctggaagtggtgtgcctcttcttgatgtaaatttcctctac----aagaaagaaacagacaccaatgttattgcatgta |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
41698213 |
atgaactcttggggactgcagctggaagtggtgtgcctcttcttgatgtaaatttcctctactagaaagaaagaaacatacaccaatgttattgcatgta |
41698114 |
T |
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| Q |
115 |
tgtataattaatagtaa |
131 |
Q |
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| T |
41698113 |
tgtataattaatagtaa |
41698097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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