View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8538_low_10 (Length: 285)

Name: NF8538_low_10
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8538_low_10
NF8538_low_10
[»] chr8 (8 HSPs)
chr8 (8-207)||(41287504-41287703)
chr8 (7-166)||(33359473-33359633)
chr8 (18-207)||(17071101-17071293)
chr8 (18-207)||(17576979-17577171)
chr8 (11-166)||(6801494-6801637)
chr8 (38-143)||(8047769-8047875)
chr8 (105-203)||(41137972-41138064)
chr8 (167-207)||(33359416-33359456)
[»] chr3 (15 HSPs)
chr3 (8-207)||(29807931-29808131)
chr3 (8-166)||(3857905-3858064)
chr3 (8-166)||(29839827-29839985)
chr3 (8-166)||(24735885-24736043)
chr3 (63-163)||(24435264-24435365)
chr3 (97-166)||(44791466-44791535)
chr3 (8-206)||(42875418-42875608)
chr3 (9-86)||(23217408-23217485)
chr3 (155-207)||(26042024-26042076)
chr3 (159-200)||(23217136-23217177)
chr3 (8-61)||(26042171-26042224)
chr3 (105-150)||(52689667-52689712)
chr3 (155-206)||(1659754-1659805)
chr3 (165-207)||(3858079-3858121)
chr3 (162-207)||(44791376-44791421)
[»] chr7 (17 HSPs)
chr7 (8-207)||(21236541-21236739)
chr7 (46-206)||(2455528-2455689)
chr7 (8-166)||(31589779-31589937)
chr7 (8-166)||(35445387-35445545)
chr7 (8-162)||(2619771-2619915)
chr7 (12-166)||(38031926-38032078)
chr7 (45-166)||(43127349-43127471)
chr7 (8-118)||(45884976-45885087)
chr7 (155-206)||(45885140-45885191)
chr7 (8-164)||(778353-778510)
chr7 (156-207)||(778518-778569)
chr7 (155-206)||(38032083-38032134)
chr7 (159-207)||(21859185-21859233)
chr7 (166-207)||(2619707-2619748)
chr7 (202-243)||(45688365-45688406)
chr7 (5-34)||(45689284-45689313)
chr7 (167-207)||(43127292-43127332)
[»] chr4 (17 HSPs)
chr4 (8-207)||(52596712-52596912)
chr4 (8-207)||(1142971-1143187)
chr4 (8-166)||(44820789-44820947)
chr4 (8-165)||(27871636-27871793)
chr4 (8-166)||(29284735-29284893)
chr4 (6-166)||(5486435-5486595)
chr4 (6-126)||(18902525-18902646)
chr4 (105-166)||(221166-221227)
chr4 (155-207)||(34442237-34442289)
chr4 (108-163)||(34442174-34442229)
chr4 (8-157)||(46394666-46394812)
chr4 (155-207)||(221232-221284)
chr4 (97-144)||(51969980-51970027)
chr4 (165-207)||(27871809-27871851)
chr4 (31-81)||(34442107-34442157)
chr4 (159-207)||(46394830-46394878)
chr4 (155-207)||(55710515-55710567)
[»] chr5 (14 HSPs)
chr5 (15-207)||(16666494-16666686)
chr5 (8-166)||(28246799-28246958)
chr5 (8-166)||(42885137-42885295)
chr5 (6-138)||(26502595-26502728)
chr5 (45-157)||(16855917-16856030)
chr5 (155-206)||(1864594-1864645)
chr5 (69-158)||(1863901-1863991)
chr5 (97-163)||(32903942-32904008)
chr5 (11-64)||(1944925-1944978)
chr5 (155-207)||(26502762-26502814)
chr5 (156-207)||(1945072-1945123)
chr5 (97-163)||(15921172-15921238)
chr5 (155-197)||(16855861-16855903)
chr5 (97-163)||(1944996-1945062)
[»] chr1 (9 HSPs)
chr1 (8-166)||(29267784-29267942)
chr1 (11-169)||(51003851-51004002)
chr1 (8-166)||(3302905-3303064)
chr1 (8-144)||(16543531-16543668)
chr1 (97-200)||(17586079-17586188)
chr1 (155-207)||(3303069-3303121)
chr1 (160-207)||(16543700-16543747)
chr1 (101-158)||(12416960-12417017)
chr1 (109-166)||(17145093-17145150)
[»] scaffold0023 (1 HSPs)
scaffold0023 (48-196)||(113522-113671)
[»] chr6 (10 HSPs)
chr6 (11-109)||(4333522-4333621)
chr6 (6-144)||(9578483-9578621)
chr6 (204-267)||(4334300-4334363)
chr6 (147-207)||(4333627-4333687)
chr6 (147-207)||(4333831-4333891)
chr6 (85-166)||(32923013-32923094)
chr6 (85-166)||(28590043-28590124)
chr6 (168-207)||(32923112-32923151)
chr6 (154-187)||(9578647-9578680)
chr6 (7-35)||(10972983-10973011)
[»] chr2 (11 HSPs)
chr2 (8-166)||(15696862-15697020)
chr2 (49-166)||(17841418-17841536)
chr2 (8-166)||(15676226-15676385)
chr2 (155-207)||(12698724-12698776)
chr2 (155-207)||(15676169-15676221)
chr2 (11-86)||(12698577-12698652)
chr2 (156-207)||(15696805-15696856)
chr2 (156-207)||(17841543-17841594)
chr2 (155-206)||(30953916-30953967)
chr2 (155-205)||(4622509-4622559)
chr2 (6-84)||(4622366-4622444)
[»] scaffold0057 (2 HSPs)
scaffold0057 (10-166)||(50017-50174)
scaffold0057 (155-207)||(49960-50012)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 41287504 - 41287703
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  |||||||| |||    
T  41287504 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatggatataattaac 41287602  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || |||||||||||| |||||||||||| | |||||||| |||||||||||||||    
T  41287603 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccaataataaattaacttaattactaaaatatccttatatat 41287702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 33359633 - 33359473
Alignment:
Q  7 gtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaa 105  Q
    ||||| ||||||||||||| |||||||| || |||  ||||| |||||||||||  | |||||||  |||||| |||||| ||||||| | |||||| ||    
T  33359633 gtaggcgtggcaaaaatactcatgcccacgggtatttgtgggcaaaatccgtcatgggcacggggtgggtagcaaaacgggtatccacgggtataatgaa 33359534  T
Q  106 cgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    |||||||||||||||||||||||||||||||| || |||  |||| ||| || ||||||||    
T  33359533 cgggtatttgactacccattattatatggatacgggcacggatttgattatatccataccc 33359473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 17071101 - 17071293
Alignment:
Q  18 aaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatttga 116  Q
    |||||||||||||||| ||| ||||||  ||| ||||| ||||    |||| || |||||||||||||| |||| |    ||||||||| ||||||||||    
T  17071101 aaaaatacccatgcccttgggtatccgcaggtgaaatctgtcatgagcacgaggtaggtagctaaacgggtatcaa----tataataaatgggtatttga 17071196  T
Q  117 ctacccattattatatggatatggaca--cat---atttt-attgtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||||  ||||   ||   ||||| ||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||    
T  17071197 ctacccattattatatggatacagacatggatttgattttgattgtacccatacccgatagtaagttaagtaaattactaaaatatcctaatatatc 17071293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 17577171 - 17576979
Alignment:
Q  18 aaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatttga 116  Q
    |||||||||||||||| ||| ||||||  ||| ||||| ||||    |||| || |||||||||||||| |||| |    ||||||||| ||||||||||    
T  17577171 aaaaatacccatgcccttgggtatccgcaggtgaaatctgtcatgagcacgaggtaggtagctaaacgggtatcaa----tataataaatgggtatttga 17577076  T
Q  117 ctacccattattatatggatatggaca--cat---atttt-attgtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||||  ||||   ||   ||||| ||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||    
T  17577075 ctacccattattatatggatacagacatggatttgattttgattgtacccatacccgatagtaagttaagtaaattactaaaatatcctaatatatc 17576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 6801637 - 6801494
Alignment:
Q  11 gggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacggg 109  Q
    ||||||||||||||||||||||||    ||  ||||||||||||||||||||| ||||||||  |||||||||||| |||||||             | |    
T  6801637 gggtggcaaaaatacccatgcccacatgtactcgtgggtaaaatccgtcacaggcacggggcgagtagctaaacgggtatccac-------------gag 6801551  T
Q  110 tatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    |||||||||||||||||||||||||||| ||| ||  |||| |||||||||||||||    
T  6801550 tatttgactacccattattatatggatacggatacggatttgattgtacccataccc 6801494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 8047875 - 8047769
Alignment:
Q  38 atatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataaacgggtatttgactacccattattatatggat 136  Q
    |||||||||| |||||||||||| ||||||||| | |||||||||| | |||||  | | |||||||||||||||||| |||| || ||| | ||||||     
T  8047875 atatccgtggataaaatccgtcatagacacgggacgggtagctaaatgcgtatcagcaggtataataaacgggtatttaactatccgttactttatggac 8047776  T
Q  137 atggaca 143  Q
    |||||||    
T  8047775 atggaca 8047769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 41138064 - 41137972
Alignment:
Q  105 acgggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttata 203  Q
    ||||||||||||||||||||| |||||  || ||    ||| |||| |||||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  41138064 acgggtatttgactacccattgttata--gaaat----acagatttaattgtacccatacccgataataaattaaataatttattaaaatatccttata 41137972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 33359456 - 33359416
Alignment:
Q  167 gataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||| ||||| |||||||||| ||||||||||||||||    
T  33359456 gataatatattaagtaaattactaaaatatccttatatatc 33359416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 29807931 - 29808131
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||| |||||||| || ||||| ||||||||||||||||| | ||||||||  ||||||||| || ||| ||| |  ||||||||     
T  29807931 taggggtggcaaaaatactcatgcccacgggtatccatgggtaaaatccgtcacgggcacggggcgagtagctaaatgggtattcacggggataataaat 29808030  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    |||| |||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  29808031 gggtgtttgactacccattattatatggatacggacacgaatttgattgtacccatacccgatgataaattaagtaaattactaaaatatccttgtatat 29808130  T
Q  207 c 207  Q
    |    
T  29808131 c 29808131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 3857905 - 3858064
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||| |||| ||||||| || ||||||||||||| |||| |||| | |||||||| |||||| |||||| ||||||  ||||||||||||    
T  3857905 taggggtggcaaaagtaccaatgcccacgggtatccgtgggtaatatccatcacgggcacggggcgggtagcgaaacgggtatccatggatataataaac 3858004  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||    
T  3858005 gggtatttgactacccattattatatggatacggacacagatttgatagtacccataccc 3858064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 29839985 - 29839827
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  |||||||| |||    
T  29839985 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatggatataattaac 29839887  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  29839886 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 29839827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 24736043 - 24735885
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactga-tataataaa 105  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| |||||| ||| |||||| ||    
T  24736043 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatcca-tgagtataattaa 24735946  T
Q  106 cgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    |||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  24735945 cgggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 24735885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 24435365 - 24435264
Alignment:
Q  63 gacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatttgactacccattattatatggatatggacacatattttattgtaccca 161  Q
    ||||||| || ||||| ||||||| ||||||  | |||||||||||| || || |||||||||||||||||||||| ||||||| |||| ||||||||||    
T  24435365 gacacggagcgggtagttaaacgggtatccatgggtataataaacggataattcactacccattattatatggatacggacacaaatttgattgtaccca 24435266  T
Q  162 ta 163  Q
    ||    
T  24435265 ta 24435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 44791535 - 44791466
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||  |||| |||||| ||||||||    
T  44791535 tataataaatgggtatttgactatccattattatatggatatggacacggatttgattgtatccataccc 44791466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 42875418 - 42875608
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataaac 106  Q
    ||||| |||| ||||||| ||||  || |||| |||| |||||||||||||||  ||||| | || |||||||||| | ||||| ||   ||||||||||    
T  42875418 tagggatggcgaaaatactcatgttcacggatgtccg-gggtaaaatccgtcatggacacagagcgggtagctaaatgagtatctacgagtataataaac 42875516  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
      ||||||||||| ||||||||||||||||| | |||||         ||||||||| ||||||||||||||| |||||||||  |||||| ||||||||    
T  42875517 ttgtatttgactatccattattatatggatacgaacaca--------ggtacccatatccgataataaattaagtaaattacttaaatatctttatatat 42875608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 23217485 - 23217408
Alignment:
Q  9 aggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg 86  Q
    |||||||||||||||||||  || || ||||| ||| ||||||||| |||||||  ||||||||||||||||||||||    
T  23217485 aggggtggcaaaaatacccccgctcacggatacccgcgggtaaaattcgtcacatgcacggggcaggtagctaaacgg 23217408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 26042076 - 26042024
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  26042076 gtacccatacccgataataaattaactaaactactaaaatatccttatatatc 26042024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 23217177 - 23217136
Alignment:
Q  159 ccatacccgataataaattaattaaattactagaatatcctt 200  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  23217177 ccatacccgataataaattaagtaaattactaaaatatcctt 23217136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 26042224 - 26042171
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcac 61  Q
    ||||||||||||||||||||||||||| || || | |||| |||||||||||||    
T  26042224 taggggtggcaaaaatacccatgcccacgggtacctgtggataaaatccgtcac 26042171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 52689712 - 52689667
Alignment:
Q  105 acgggtatttgactacccattattatatggatatggacacatattt 150  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||    
T  52689712 acgggtatttgactagccattattttatggatatggacacagattt 52689667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 1659805 - 1659754
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    |||||||||  |||||||||||||| |||||| ||| |||||||||||||||    
T  1659805 gtacccatattcgataataaattaagtaaattgctaaaatatccttatatat 1659754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 3858079 - 3858121
Alignment:
Q  165 ccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||| ||||||| || ||||||||||||||||    
T  3858079 ccgataataaattaagtaaattattaaaatatccttatatatc 3858121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 44791421 - 44791376
Alignment:
Q  162 tacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||||||  ||||||||| |||||| |||||||||    
T  44791421 tacccgataataaattaaacaaattactaaaatatcattatatatc 44791376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 21236541 - 21236739
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| | ||||||   ||||||||||||| |||| |  | ||||||||||    
T  21236541 taggggtggcaaaaatacccatgcccacggatacccgtgggtaaaatc-gtcacgggcacgggatgggtagctaaacgggtatcaatggttataataaac 21236639  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||||||||||| ||||||||||||||||| ||||||  |||| ||| || ||||||||||||||||||||| ||||||| || || ||||||||||||    
T  21236640 gggtatttgactatccattattatatggatacggacacggatttgattctatccatacccgataataaattaagtaaattatta-aaaatccttatatat 21236738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 2455528 - 2455689
Alignment:
Q  46 gggtaaaatccgtcacagacacggggcaggtagctaaac-ggtatccactgatataataaacgggtatttgactacccattattatatggatatggacac 144  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||||| | ||||  ||||||| ||||||||||||||||||||||| ||| |||||     
T  2455528 gggtaaaatccgtcacggatacggggcaggtagctaaacaggtatccacgggtatacgaaacgggcatttgactacccattattatatgaatacggacat 2455627  T
Q  145 atattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
      |||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  2455628 ggatttgattgtacccatacctgataataaattaagtaaattactaaaatatccttatatat 2455689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 31589779 - 31589937
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaac-ggtatccactgatataataaac 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| || | ||||||||||| ||||||||  | |||||| |||    
T  31589779 taggggtggcaaaaatacccatgcccatggatacccgtgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 31589877  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  31589878 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 31589937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 35445545 - 35445387
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  35445545 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 35445447  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  35445446 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 35445387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 2619915 - 2619771
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacggtatccactgatataataaacg 107  Q
    |||||| ||||||||||||||||||| ||| || ||||||||||||||| |||||| |||||||   |||||||         ||| | |||||||||||    
T  2619915 taggggcggcaaaaatacccatgccc-tgggtacccgtgggtaaaatccctcacaggcacggggggtgtagcta---------caccggtataataaacg 2619826  T
Q  108 ggtatttgactacccattattatatggatatggacacatattttattgtacccat 162  Q
     ||||||||||| |||||||||||||||||  |||||| ||||  ||||||||||    
T  2619825 agtatttgactatccattattatatggatacagacacagatttggttgtacccat 2619771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 38031926 - 38032078
Alignment:
Q  12 ggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacggtatccactgatataataaacgggta 111  Q
    |||||||||||||| |||| ||||||||| |||| | ||||||||||||  | |||| | | | |||||||  |||||||||   |||||||||| ||||    
T  38031926 ggtggcaaaaatactcatgtccatggata-ccgtagataaaatccgtcatgggcacgag-cggatagctaacgggtatccacgagtataataaacaggta 38032023  T
Q  112 tttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    |||||||||  ||| ||||||||||||||||||  |||| |||||||||| ||||    
T  38032024 tttgactacatattgttatatggatatggacacggatttgattgtacccacaccc 38032078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 43127471 - 43127349
Alignment:
Q  45 tgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatttgactacccattattatatggatatggaca 143  Q
    ||||||||||||||||| | |||||| | | ||||||| ||| ||||||  | ||||||||| |||||||||||||  |||||||||||||||| |||||    
T  43127471 tgggtaaaatccgtcacgggcacgggacggatagctaagcgggtatccatgggtataataaatgggtatttgactattcattattatatggatacggaca 43127372  T
Q  144 catattttattgtacccataccc 166  Q
    |  |||| |||||| ||||||||    
T  43127371 cggatttgattgtatccataccc 43127349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 45884976 - 45885087
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||| |||||||||||||||||| || |  |||  ||||||||||||||| || ||||| ||||||||||||||| |||||||   |||||||||     
T  45884976 taggggtgacaaaaatacccatgcccacgggtgcccgcaggtaaaatccgtcacggaaacgggacaggtagctaaacggatatccacatgtataataaat 45885075  T
Q  107 gggtatttgact 118  Q
    | ||||||||||    
T  45885076 gagtatttgact 45885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 45885140 - 45885191
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  45885140 gtacccatacccgataataaattaagcaaattactaaaatatccttatatat 45885191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 778353 - 778510
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||| |||||||||||||| ||| || ||   |||||||| |||| |||| |||||||||| | ||  || |||| ||||||  | | ||||||||    
T  778353 taggggtgccaaaaatacccatgtccacgggtacatgtgggtaatatccatcacggacacggggcggatatttagacgggtatccatgggtgtaataaac 778452  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatac 164  Q
    || ||||||| || |||||||||||| ||||| |||||  |||| ||||||| |||||    
T  778453 ggatatttgattatccattattatatagatatagacacggatttgattgtactcatac 778510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 778518 - 778569
Alignment:
Q  156 tacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  778518 tacccatacccgataataaattaagtaaatgactaaaatattcttatatatc 778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 38032083 - 38032134
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||||||||||||||||||||||| |||| ||||| ||| |||||||||||    
T  38032083 gtacccatacccgataataaattaactaaactactaaaatttccttatatat 38032134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 21859185 - 21859233
Alignment:
Q  159 ccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||||||||| |||||||||| |||||  |||||||||    
T  21859185 ccatacccgataataaattaagtaaattactaaaatatttttatatatc 21859233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 2619748 - 2619707
Alignment:
Q  166 cgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  2619748 cgataataaattaagtaaattactaaaatatccatatatatc 2619707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 45688406 - 45688365
Alignment:
Q  202 tatatcacactatccgtatccatgagtaccattgacatccct 243  Q
    ||||||| |||||  |||||||||||||||||||||||||||    
T  45688406 tatatcatactatttgtatccatgagtaccattgacatccct 45688365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 45689313 - 45689284
Alignment:
Q  5 gagtaggggtggcaaaaatacccatgccca 34  Q
    ||||||||||||||||||||||||||||||    
T  45689313 gagtaggggtggcaaaaatacccatgccca 45689284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 43127332 - 43127292
Alignment:
Q  167 gataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||| |||| ||||| ||||||||||||||||    
T  43127332 gataataaattaactaaactactaaaatatccttatatatc 43127292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 52596712 - 52596912
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    ||||| ||||||||||||||||||||| || || || ||| |||||||||||||  |||||| || ||||||||||||| |||||||   ||||||||||    
T  52596712 tagggatggcaaaaatacccatgcccacgggtacccatggataaaatccgtcacgaacacggagcgggtagctaaacgggtatccacatgtataataaac 52596811  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||| |||||||||||||||||||||||||  || || ||||| ||||||||||||||||||| |||| ||| ||||||| || ||||| || ||||||    
T  52596812 gggtacttgactacccattattatatggatacagagacgtatttgattgtacccatacccgatattaaaataagtaaattattaaaatattctcatatat 52596911  T
Q  207 c 207  Q
    |    
T  52596912 c 52596912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 1142971 - 1143187
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||| |||||||| |||| ||| |||| |  || |||||||||||||||||||| |||||||| | ||||||||||||| ||||||| | ||||||||||    
T  1142971 taggagtggcaaacatactcatacccacgagtacccgtgggtaaaatccgtcaccgacacgggacgggtagctaaacggatatccacaggtataataaac 1143070  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttatt----------------gtacccatacccgataataaattaattaaattacta 190  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| |||                ||||||||||||||||||||||||| ||||||||||    
T  1143071 gggtatttgactacccattattatatggacacgaacatatatttgatttgtatccatacccacggtacccatacccgataataaattaagtaaattacta 1143170  T
Q  191 gaatatccttatatatc 207  Q
    |||||||||||||||||    
T  1143171 gaatatccttatatatc 1143187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 44820947 - 44820789
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  44820947 taggggtggcaaaaatacccatgcccatggatacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 44820849  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  44820848 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 44820789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 27871636 - 27871793
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||  || ||||||| ||||||||||||||||||||| | ||||| |||| |||||||| ||| |||   |||||||||     
T  27871636 taggggtggcaaaaatacccatgttcacggatatctgtgggtaaaatccgtcacagatatggggcgggta-ctaaacgggtattcacgagtataataaat 27871734  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccatacc 165  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  27871735 gggtatttgactatccattattatatggatacggacacaaatttgattgtactcatacc 27871793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 29284735 - 29284893
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  29284735 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 29284833  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  29284834 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 29284893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 5486435 - 5486595
Alignment:
Q  6 agtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataa 104  Q
    ||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |    
T  5486435 agtaggggtggcaaaaatatccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataatta 5486533  T
Q  105 acgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  5486534 acgggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 5486595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 18902525 - 18902646
Alignment:
Q  6 agtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataa 104  Q
    |||||||||||||||||||| |||||||| ||||| | ||||||||||||| |||  | |||| | | ||| |||||| || |||||||   ||||||||    
T  18902525 agtaggggtggcaaaaatactcatgcccacggatacctgtgggtaaaatccatcatgggcacgagacgggtggctaaatggatatccacgcgtataataa 18902624  T
Q  105 acgggtatttgactacccatta 126  Q
    ||||||||||||||||||||||    
T  18902625 acgggtatttgactacccatta 18902646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 221166 - 221227
Alignment:
Q  105 acgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||| |||||| ||||||||    
T  221166 acgggtatttgactacccattattatatggatacggacacggatttgattgtatccataccc 221227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 34442237 - 34442289
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  34442237 gtacccatacccgataataaattaagtaaattattaaaatatccttatatatc 34442289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 34442174 - 34442229
Alignment:
Q  108 ggtatttgactacccattattatatggatatggacacatattttattgtacccata 163  Q
    |||||| ||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  34442174 ggtattagactacccattattatatggatatggacacggatttgattgtacccata 34442229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 46394666 - 46394812
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    ||||||||||||||||||| ||| ||| ||     ||||||||||||||||||| |  ||||| | | ||||||| ||| |||||||   |||||||||     
T  46394666 taggggtggcaaaaatacctatgtccacggg----cgtgggtaaaatccgtcacggggacgggacggatagctaagcgggtatccacgtgtataataaat 46394761  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgta 157  Q
    | ||||||||||| | ||||||||||| ||||||||||  |||| ||||||    
T  46394762 gagtatttgactatctattattatatgaatatggacacggatttgattgta 46394812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 221232 - 221284
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||| ||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  221232 gtacacataccctataataaattaagtaaattactaaaatatccttatatatc 221284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 51969980 - 51970027
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacac 144  Q
    |||||||||||||||||| |||||| |||||| || ||||||||||||    
T  51969980 tataataaacgggtattttactacctattattttaaggatatggacac 51970027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 27871809 - 27871851
Alignment:
Q  165 ccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  27871809 ccgataataaattaagtaaattactaaaatattcttatatatc 27871851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 34442107 - 34442157
Alignment:
Q  31 cccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagcta 81  Q
    ||||||| || |||||||||||||||||||| |||||||| | ||||||||    
T  34442107 cccatgggtacccgtgggtaaaatccgtcacggacacgggacgggtagcta 34442157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 46394830 - 46394878
Alignment:
Q  159 ccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||| ||||||||| ||||| |||| |||||| |||||||||    
T  46394830 ccatacccgatgataaattaagtaaatgactaaaatatctttatatatc 46394878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 55710567 - 55710515
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||| |||||| |||||||||||| | |||||||| |||||| |||||||||    
T  55710567 gtacctatacccaataataaattaaattaattactaaaatatctttatatatc 55710515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 16666686 - 16666494
Alignment:
Q  15 ggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatt 113  Q
    ||||||||||||||||||||||| || ||| ||||||||||| |||| |  ||||  | ||||||||||||| ||||||  | |||||| ||||||||||    
T  16666686 ggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggtacgga-cgggtagctaaacgggtatccatgggtataattaacgggtatt 16666588  T
Q  114 tgactacccattattatatggatatggacacatattttattgtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||| ||| ||||||  |||| || |||||||||||| |||||||||||| | |||||||| ||||||||||||||||    
T  16666587 tgactacccattattatatgaatacggacacggatttgatggtacccatacccaataataaattaacttaattactaaaatatccttatatatc 16666494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 28246799 - 28246958
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    ||||||||||||||||||||||| ||| || || ||||  |||||||  ||||| |||||||||| | ||||||||||| ||||||   |||||||||||    
T  28246799 taggggtggcaaaaatacccatgtccacgggtacccgtaagtaaaatttgtcacggacacggggcggatagctaaacgggtatccatgtatataataaac 28246898  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    |||||||||||||||||||||||||| |||| ||||||| |||| |||||| ||||||||    
T  28246899 gggtatttgactacccattattatatagatacggacacagatttgattgtatccataccc 28246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 42885137 - 42885295
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  42885137 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 42885235  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||||||||||  |||| || ||||||||||||    
T  42885236 gggtatttgactacccattattatatgaatatggacacggatttgatggtacccataccc 42885295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 26502595 - 26502728
Alignment:
Q  6 agtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataa 104  Q
    |||||||||||||||||||| |||||||| || || |||||||||| ||| |||| ||||||||    |||||||||||| |||||||| | ||||||||    
T  26502595 agtaggggtggcaaaaatacacatgcccacgggtacccgtgggtaagatctgtcatagacacggaatgggtagctaaacgagtatccacgggtataataa 26502694  T
Q  105 acgggtatttgactacccattattatatggatat 138  Q
    |||||||||||||||||||||| |||||||||||    
T  26502695 acgggtatttgactacccattagtatatggatat 26502728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 16856030 - 16855917
Alignment:
Q  45 tgggtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataaacgggtatttgactacccattattatatggatatggaca 143  Q
    ||||||||||||||||| | ||| | |  |||||||||||| ||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||    
T  16856030 tgggtaaaatccgtcacgggcaccgagtgggtagctaaacgagtatccacaagtataataaacgggtatttgactatccattattatatggatatggaca 16855931  T
Q  144 catattttattgta 157  Q
    |  |||| ||||||    
T  16855930 cggatttgattgta 16855917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 1864594 - 1864645
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1864594 gtacccatacccgataataaattaagtaaattactaaaatatccttatatat 1864645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 1863901 - 1863991
Alignment:
Q  69 gggcaggtagctaaacgg-tatccactgatataataaacgggtatttgactacccattattatatggatatggacacatattttattgtac 158  Q
    |||||||||||||||||| |||||||   ||||||||| |||||||| |||| ||||||||||||||||| | ||||  |||| |||||||    
T  1863901 gggcaggtagctaaacgggtatccacgagtataataaatgggtatttaactatccattattatatggatacgaacacgaatttgattgtac 1863991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 32904008 - 32903942
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccata 163  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||  |||| |||||| |||||    
T  32904008 tataataaacgggtattcgactacccatcattatatggatacggacacggatttgattgtatccata 32903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1944925 - 1944978
Alignment:
Q  11 gggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacaga 64  Q
    ||||||||||||||| |||||||| || || |||||||||||||||||||||||    
T  1944925 gggtggcaaaaatactcatgcccacgggtacccgtgggtaaaatccgtcacaga 1944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 26502762 - 26502814
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||| |||||||| |||||||||| ||||| ||||||||||    
T  26502762 gtacccatacccgatattaaattaactaaattactaaaatattcttatatatc 26502814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 1945072 - 1945123
Alignment:
Q  156 tacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||| |||||||||||| || ||||||| ||||||||||||||||    
T  1945072 tacccatacccaataataaattaagtatattactaaaatatccttatatatc 1945123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 15921172 - 15921238
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccata 163  Q
    ||||||||||||||||||||||||  ||||||||||| ||| ||||| | |||| ||||||| ||||    
T  15921172 tataataaacgggtatttgactacatattattatatgaatacggacatagatttgattgtactcata 15921238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 16855903 - 16855861
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatc 197  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  16855903 gtacccatacccgataataaattaagtaaattactaaaatatc 16855861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 1944996 - 1945062
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccata 163  Q
    ||||||||| ||||||||||| ||  ||||||||||||||| ||||||  |||| |||||| |||||    
T  1944996 tataataaatgggtatttgaccacatattattatatggatacggacacggatttaattgtatccata 1945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 29267784 - 29267942
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  29267784 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 29267882  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||||||||||||    
T  29267883 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccc 29267942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 51003851 - 51004002
Alignment:
Q  11 gggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacggg 109  Q
    ||||||||||||||||||||||||        |||| | |||||||||||||| |||||| | ||||||||||||| ||||||| ||||||||||||||     
T  51003851 gggtggcaaaaatacccatgccca--------cgtgtgcaaaatccgtcacaggcacgggacgggtagctaaacgggtatccacggatataataaacgga 51003942  T
Q  110 tatttgactacccattattatatggatatggacacatattttattgtacccatacccgat 169  Q
    |||||||||| ||||||||||||||||| ||||||| |||| ||||||  ||||||||||    
T  51003943 tatttgactatccattattatatggatacggacacaaatttgattgtatacatacccgat 51004002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 3302905 - 3303064
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataaac 106  Q
    ||||||||||||||| || |||| ||| ||||| |||||| |||||||| | || |||||||| ||| ||| |||| | |||||||| | |||||||||     
T  3302905 taggggtggcaaaaaaactcatggccacggatacccgtggataaaatccattacggacacgggacagataggtaaatgagtatccacgggtataataaat 3303004  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||| ||||||||||||| | | ||||||  |||| | |||| ||||||||    
T  3303005 gggtatttgactatccattattatatgaaaacggacacggatttgactgtatccataccc 3303064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 16543531 - 16543668
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtca-cagacac-ggggcaggtagctaaacggtatccactgatataataaa 105  Q
    ||||||||| |||||||| ||| |||| || |||| ||||||||||||||||| ||| ||| ||||||||||| |||||||  | ||| |||||| ||||    
T  16543531 taggggtggtaaaaatactcatacccacgggtatctgtgggtaaaatccgtcatcag-cacaggggcaggtagttaaacgggtttcacggatatagtaaa 16543629  T
Q  106 cgggtatttgactacccattattatatggatatggacac 144  Q
    | |||||||||||| |||||||||||| |||| ||||||    
T  16543630 caggtatttgactatccattattatatagatacggacac 16543668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 17586079 - 17586188
Alignment:
Q  97 tataataaacgggtatttgactacccattattatatggatatggacacatattttat------tgtacccatacccgataataaattaattaaattacta 190  Q
    |||||||||||| |||||||||| ||||| || ||| |||||||||||| |||| ||       ||||| ||||||||||||||||||| || |||||||    
T  17586079 tataataaacggatatttgactatccattgttttatagatatggacacagatttgatgatacccgtacctatacccgataataaattaaatatattacta 17586178  T
Q  191 gaatatcctt 200  Q
     |||||||||    
T  17586179 aaatatcctt 17586188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 3303069 - 3303121
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||    
T  3303069 gtacccatacccgatgataaattaaataaatgactaaaatatccttatatatc 3303121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 16543700 - 16543747
Alignment:
Q  160 catacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||    
T  16543700 catacccgataataaattaagtaaattactacaatatcgttatatatc 16543747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 12416960 - 12417017
Alignment:
Q  101 ataaacgggtatttgactacccattattatatggatatggacacatattttattgtac 158  Q
    |||||||||||||||||||| ||||||||||||||||   ||||| |||| |||||||    
T  12416960 ataaacgggtatttgactactcattattatatggatacaaacacagatttgattgtac 12417017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 17145093 - 17145150
Alignment:
Q  109 gtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||||| | ||||  |||| |||||| ||| ||||    
T  17145093 gtatttgactacccattattatatggatacgaacacggatttaattgtatccaaaccc 17145150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 113671 - 113522
Alignment:
Q  48 gtaaaatccgtcacagacacggggcaggtagctaaacg-gtatccactgatataataaacgggtatttgactacccattattatatggatatggacacat 146  Q
    |||||||||||||| | |||| ||  ||||| |||| | ||||||||   |||| ||||||||||||||||||||  |||||||||| ||||||| ||||    
T  113671 gtaaaatccgtcacgggcacgtggagggtagttaaatgagtatccacatgtatagtaaacgggtatttgactaccagttattatatgtatatggatacat 113572  T
Q  147 attttattgtacccatacccgataataaattaattaaattactagaatat 196  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  113571 atttgattgtacccatacccgataacaaattaattaaattactaaaatat 113522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 4333522 - 4333621
Alignment:
Q  11 gggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaac-ggtatccactgatataataaacggg 109  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||  ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  4333522 gggtggcaaaaatacccatgcccatgggtatcggtgggtaaaatccatcacgaacacggggcaggtagctaaacgggtatccacggatataataaacggg 4333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 9578483 - 9578621
Alignment:
Q  6 agtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataa 104  Q
    ||||||||||| |||||||| |||| || ||| || |||||||||||||||||||| ||||  || ||  ||| ||||||| ||||  ||||||||||||    
T  9578483 agtaggggtggaaaaaatactcatggccgtgggtacccgtgggtaaaatccgtcacggacatcggacaaatagataaacgggtatct-ctgatataataa 9578581  T
Q  105 acgggtatttgactacccattattatatggatatggacac 144  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  9578582 acgggtagttgactacccattattttatggatatggacac 9578621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 4334300 - 4334363
Alignment:
Q  204 tatcacactatccgtatccatgagtaccattgacatccctaacggagatagtagtactatcttt 267  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  4334300 tatcacactatccgtattcatgggtaccattgacatccctaacggagatagtagtactatcttt 4334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 4333627 - 4333687
Alignment:
Q  147 attttattgtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4333627 attttattgtacccatactcgataataaattaattaaattactaaaatatccttatatatc 4333687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 4333831 - 4333891
Alignment:
Q  147 attttattgtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4333831 attttattgtacccatactcgataataaattaattaaattactaaaatatccttatatatc 4333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 32923013 - 32923094
Alignment:
Q  85 ggtatccactgatataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||  |||| |||||  ||||||||    
T  32923013 ggtatccacgggtataataaacgggtatttgactacccattattatatggatacagacacggatttgattgtgtccataccc 32923094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 28590043 - 28590124
Alignment:
Q  85 ggtatccactgatataataaacgggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||| | |||||||||| ||||||||||||| ||||||||||||||||  |||||  |||| || ||| ||||||||    
T  28590043 ggtatccacgggtataataaacaggtatttgactactcattattatatggatacagacacgaatttgatagtatccataccc 28590124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 32923112 - 32923151
Alignment:
Q  168 ataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  32923112 ataataaattaactaaattactaaaatatccttatatatc 32923151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 9578647 - 9578680
Alignment:
Q  154 tgtacccatacccgataataaattaattaaatta 187  Q
    |||||||||||||||||||||||||| |||||||    
T  9578647 tgtacccatacccgataataaattaagtaaatta 9578680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 10973011 - 10972983
Alignment:
Q  7 gtaggggtggcaaaaatacccatgcccat 35  Q
    |||||||||||||||||||||||||||||    
T  10973011 gtaggggtggcaaaaatacccatgcccat 10972983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 15697020 - 15696862
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaac 106  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| |||| | |||||  | ||||||||||||| ||||||  | |||||| |||    
T  15697020 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcacgga-cgggtagctaaacgggtatccatgggtataattaac 15696922  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||| || ||| ||||||||    
T  15696921 gggtatttgactacccattattatatgaatacggacacggatttgatggtatccataccc 15696862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 17841418 - 17841536
Alignment:
Q  49 taaaatccgtcacagacacggggcaggtagctaaacgg-tatccactgatataataaacgggtatttgactacccattattatatggatatggacacata 147  Q
    ||||||| ||||  ||||||||| |||||||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||  |    
T  17841418 taaaatctgtcatggacacggggtaggtagctaaacagatatccacgggtataataaacgagtatttgactacccattattatatggatacggacacgga 17841517  T
Q  148 ttttattgtacccataccc 166  Q
    ||| |||||||||||||||    
T  17841518 tttgattgtacccataccc 17841536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 15676385 - 15676226
Alignment:
Q  8 taggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaac-ggtatccactgatataataaac 106  Q
    |||||||||||||| |||||||| |||  | ||||||||||||||||||||||  | ||  |||||||||||||||| |||| |||| | |||||| |||    
T  15676385 taggggtggcaaaagtacccatgtccactggtatccgtgggtaaaatccgtcaggggcatagggcaggtagctaaacgggtaaccacgggtataattaac 15676286  T
Q  107 gggtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    | ||||||||||||  |||||||||| |||| || |||  |||| ||||||  |||||||    
T  15676285 gagtatttgactacatattattatatagatacggtcacgaatttgattgtattcataccc 15676226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 12698724 - 12698776
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  12698724 gtacccatacccgataataaattaagtagattactaaaatatccttatatatc 12698776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 15676221 - 15676169
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||||| || |||||||||| |||||| |||||||||    
T  15676221 gtacccatacccgataataaatcaagtaaattactaaaatatctttatatatc 15676169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 12698577 - 12698652
Alignment:
Q  11 gggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaacgg 86  Q
    |||| |||||||||| |||||||| || || |||||| ||||||||||||| | ||||||||| |||| |||||||    
T  12698577 gggtagcaaaaatactcatgcccacgggtacccgtggataaaatccgtcacgggcacggggcacgtagttaaacgg 12698652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 15696856 - 15696805
Alignment:
Q  156 tacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    ||||||||||| |||||||||||| | |||||||| ||||||||||||||||    
T  15696856 tacccatacccaataataaattaacttaattactaaaatatccttatatatc 15696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 17841543 - 17841594
Alignment:
Q  156 tacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||||||||||||||||||||||| ||||||| || |||||| |||||||||    
T  17841543 tacccatacccgataataaattaagtaaattaataaaatatctttatatatc 17841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 30953916 - 30953967
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatat 206  Q
    ||||||||||||||||||||||||| |||||||||| | ||| |||||||||    
T  30953916 gtacccatacccgataataaattaagtaaattactaaattattcttatatat 30953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 4622509 - 4622559
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatata 205  Q
    ||||||||||| ||||||||||||| |||||||||| |||||| |||||||    
T  4622509 gtacccataccagataataaattaagtaaattactaaaatatcgttatata 4622559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 4622366 - 4622444
Alignment:
Q  6 agtaggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaac 84  Q
    |||| |||||||||||||||||| |||||||  || | |||||||||||| | ||| |  ||||||| |||||||||||    
T  4622366 agtaagggtggcaaaaatacccaagcccatgagtacctgtgggtaaaatctgccacgggtacggggcgggtagctaaac 4622444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 50174 - 50017
Alignment:
Q  10 ggggtggcaaaaatacccatgcccatggatatccgtgggtaaaatccgtcacagacacggggcaggtagctaaac-ggtatccactgatataataaacgg 108  Q
    ||||||||||||||||||||||||| || || |||||||||||||||||||  | ||  |||  ||||  ||||| || ||||||   ||||||||| |     
T  50174 ggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcatagggtgggtacgtaaacgggaatccacgagtataataaatga 50075  T
Q  109 gtatttgactacccattattatatggatatggacacatattttattgtacccataccc 166  Q
    ||||||||||||||||| ||||||||||| ||||||  |||| ||| || ||||||||    
T  50074 gtatttgactacccatttttatatggatacggacacggatttgattataaccataccc 50017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 50012 - 49960
Alignment:
Q  155 gtacccatacccgataataaattaattaaattactagaatatccttatatatc 207  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  50012 gtactcatacccgataataaattaagtaaattactaaaatatccttgtatatc 49960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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