View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_18 (Length: 221)
Name: NF8538_low_18
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 39211236 - 39211431
Alignment:
| Q |
12 |
attattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgtt |
111 |
Q |
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| T |
39211236 |
attattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgtt |
39211335 |
T |
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| Q |
112 |
acaattaagaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagttttt |
207 |
Q |
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| T |
39211336 |
acaattaagaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatgctatcagctatatagttttt |
39211431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 27509697 - 27509509
Alignment:
| Q |
19 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaatta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27509697 |
tcccttatgaactttttcaattctttgcatataagaaaaatagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaatta |
27509598 |
T |
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| Q |
119 |
agaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagttttt |
207 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
27509597 |
agaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatactatcagttatatagttttt |
27509509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 27271710 - 27271814
Alignment:
| Q |
19 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
116 |
Q |
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||||||||||||||||| ||||||||||||| |||||| ||| || ||| ||||||| ||| ||||||||||||||||| || ||||||||||||||| |
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| T |
27271710 |
tcccttatgaactttttaaattctttgcatacaagaaactcagcgcctcaattatgtatttcttaagctatcaattttcagttcttgcatctgttacaat |
27271809 |
T |
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| Q |
117 |
taaga |
121 |
Q |
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||||| |
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| T |
27271810 |
taaga |
27271814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 42093236 - 42093086
Alignment:
| Q |
19 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||| | || ||||| ||||||||| |
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| T |
42093236 |
tcccttatgaactttctcaattctttgcatataagaaaaatagtgcttcaattatgtacttcaaatgctatcaattttgagttcatgcatatgttacaat |
42093137 |
T |
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| Q |
117 |
taagaacat--gtgttaattgccctgcagctgttacatccaatttaagtag |
165 |
Q |
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|| | |||| || | |||||||||| ||||||||||||||||| ||||| |
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| T |
42093136 |
taggcacatgagtatcaattgccctgtggctgttacatccaatttcagtag |
42093086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 29707147 - 29707042
Alignment:
| Q |
19 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
116 |
Q |
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||||||||||||||||| ||||||||||||| |||||| || || ||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
29707147 |
tcccttatgaactttttaaattctttgcatacaagaaacttagcgcctcaattatgtacttcttaagctatcaattttcagttcttgcatctgttacaat |
29707048 |
T |
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| Q |
117 |
taagaa |
122 |
Q |
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|||||| |
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| T |
29707047 |
taagaa |
29707042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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