View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_19 (Length: 221)
Name: NF8538_low_19
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 36941000 - 36940809
Alignment:
| Q |
13 |
attattcttcctagcataacaagctccaactcttttttagaacacaaacaaaataaaaaatgagtactacagactaatttgtgatatgaaatagtagtac |
112 |
Q |
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| T |
36941000 |
attattcttcctagcataacaagctccaactcgtttttagaacacaaacaaaataaaaaatgagtactacagactaatttgtgatatgaaatagtagtac |
36940901 |
T |
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| Q |
113 |
taagaaataaggattacattgtgcgagttctcactagtatgaaattaaattaactatatcaatttctgaattgtctcgtgagagttctgcat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36940900 |
taagaaataaggattacattgtgcgagttctcactagtatgaaattaaattaactatatcaatttctgaattgtctcgtgagagttctgcat |
36940809 |
T |
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